This dataset contains species identifications of sponges collected during survey SOL4934 (R.V. Solander, 27 August - 24 September, 2009). Animals were collected from the Joseph Bonaparte Gulf with a benthic sled. Specimens were lodged at Northern Territory Museum on the 26 September 2009. Species-level identifications were undertaken by Belinda Glasby at the Northern Territory Museum and were delivered to Geoscience Australia on the 23 February 2011. See GA Record 2010/09 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.

This dataset contains species identifications of echinoderms collected during survey GA2476 (R.V. Solander, 12 August - 15 September 2008). Animals were collected from the Western Australian Margin with a BODO sediment grab or rock dredge. Specimens were lodged at Museum of Victoria on the 10 March 2009. Species-level identifications were undertaken by Tim O'Hara at the Museum of Victoria and were delivered to Geoscience Australia on the 24 April 2009. See GA Record 2009/02 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.

This study was undertaken as part of a program to collect baseline data from the seabed environments over the Van Diemen Rise, which comprises a series of carbonate platforms and banks in the eastern Joseph Bonaparte Gulf, northwest of Darwin. Samples were collected during a survey on board the RV Solander in August and September 2009. The state of saturation for the different carbonate minerals (aragonite, calcite, high-magnesium calcite) was calculated for each sampling site from the ratio of the ion activity product and the solubility product. The carbonate ion concentration used for the ion activity product was calculated from total alkalinity and pH. The solubility products of the carbonate minerals were derived from literature data, e.g. the solubility for high-magnesium calcite as a function of the mol% MgCO3 was based on experimental results by Plummer and Mackenzie (1974, American Journal of Science vol. 274, p. 61-83). The calculated average state of saturation was 1.4 (range: 0.8-1.9) for high-magnesium calcite, 4.2 (range: 3.4-4.6) for aragonite, and 6.4 (range: 5.1-6.8) for calcite. Values close to 1 suggest the mineral is in thermodynamic equilibrium with ambient water, which is the case for high-magnesium calcite. In contrast, aragonite and calcite are distinctively supersaturated. Given the near-equilibrium state of high-magnesium calcite, this mineral phase will likely be lost over a time scale of decades as ocean acidification progresses. This ongoing process will alter the sediment composition significantly given the high abundance of high-magnesium calcite. This study supports the concept of using high-magnesium calcite as an indicator for the progression of ocean acidification where surface sediments have been sampled and preserved over time.

This introductory chapter provides an overview of the book's contents and definitions of key concepts including benthic habitat, potential habitat and seafloor geomorphology. The chapter concludes with a summary of commonly used habitat mapping technologies. Benthic (seafloor) habitats are physically distinct areas of seabed that are associated with particular species, communities or assemblages that consistently occur together. Benthic habitat maps are spatial representations of physically distinct areas of seabed that are associated with particular groups of plants and animals. Habitat maps can illustrate the nature, distribution and extent of distinct physical environments present and importantly they can predict the distribution of the associated species and communities.

Models of seabed sediment mobilisation by waves and currents over Australia's continental shelf environment are used to examine whether disturbance regimes exist in the context of the intermediate disturbance hypothesis (IDH). Our study shows that it is feasible to model the frequency and magnitude of seabed disturbance in relation to the dominant energy source (wave-dominated shelf, tide-dominated shelf or tropical cyclone dominated shelf). Areas are mapped where the recurrence interval of disturbance events is comparable to the rate of ecological succession, which meets criteria defined for a disturbance regime. We focus our attention on high-energy, patch-clearing events defined as exceeding the Shields (bed shear stress) parameter value of 0.25. Using known rates of ecological succession for different substrate types (gravel, sand, mud), predictions are made of the spatial distribution of a dimensionless ecological disturbance index (ED), given as: ED = FA (ES/RI), where ES is the ecological succession rate for different substrates, RI is the recurrence interval of disturbance events and FA is the fraction of the frame of reference (surface area) disturbed. Maps for the Australian continental shelf show small patches of ED-seafloor distributed around the continent, on both the inner and outer shelf. The patterns are different for wave-dominated (patches on the outer shelf trending parallel to the coast), tide-dominated (patches crossing the middle-shelf trending normal to the coast) and cyclone-dominated (large oval-shaped patches crossing all depths). Only a small portion of the shelf (perhaps ~10%) is characterised by a disturbance regime as defined here. To our knowledge, this is the first time such an analysis has been attempted for any continental shelf on the earth.

This dataset contains species identifications of molluscs collected during survey SOL4934 (R.V. Solander, 27 August - 24 September, 2009). Animals were collected from the Joseph Bonaparte Gulf with a benthic sled. Specimens were lodged at Northern Territory Museum on the 3 May 2010. Species-level identifications were undertaken by Richard Willan at the Northern Territory Museum and were delivered to Geoscience Australia on the 5 May 2010 (leg 1 only). See GA Record 2010/09 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.

This special issue of Continental Shelf Research presents 13 research papers that contain the latest results in the field of benthic marine environment mapping and seabed characterisation. A total of 10 papers in this special issue were presented as papers and posters at GeoHab conferences in 2007 (Noumea, New Caledonia), 2008 (Sitka, Alaska) and 2009 (Trondheim, Norway). The annual GeoHab conference provides a forum in which marine physical and biological scientists, managers, policy makers, and industry representatives can convene to engage in discussions regarding mapping and characterising the seabed. The papers contained in this special issue build on the work published in Greene and Todd (2005): Mapping the Seafloor for Habitat Characterization, a special publication of the Geological Association of Canada.

Physical sedimentological processes such as the mobilisation and transport of shelf sediments during extreme storm events give rise to disturbances that characterise many shelf ecosystems. The intermediate disturbance hypothesis predicts that biodiversity is controlled by the frequency of disturbance events, their spatial extent and the amount of time required for ecological succession. A review of available literature suggests that periods of ecological succession in shelf environments range from 1 to over 10 years. Physical sedimentological processes operating on continental shelves having this same return frequency include synoptic storms, eddies shed from intruding ocean currents and extreme storm events (cyclones, typhoons and hurricanes). Modelling studies that characterise the Australian continental shelf in terms of bed stress due to tides, waves and ocean currents were used here to create a map of ecological disturbance, defined as occurring when the Shield's parameter exceeds a threshold of 0.25. We also define a dimensionless ecological disturbance ratio (ED) as the rate of ecological succession divided by the recurrence interval of disturbance events. The results illustrate that on the outer part of Australia's southern, wave-dominated shelf the mean number of days between threshold events that the Shield's parameter exceeds 0.25 is several hundred days.

The World Summit on Sustainable Development implementation plan requires, by 2012, a representative system of marine protected areas (RSMPA) for the purposes of long-term conservation of marine biodiversity. A great challenge for meeting this goal, particularly in data-poor regions, is to avoid inadvertant failure while giving science the time and resources to provide better knowledge. A staged process is needed for identifying areas in data-poor regions that would enable the objectives to be achieved in the long term. We elaborate a procedure that would satisfy the first stage of identifying a RSMPA, including areas suitable as climate change refugia and as reference areas for monitoring change without direct interference of human activities. The procedure is based on the principles of systematic conservation planning. The first step involves the identification of ecologically-separated provinces along with the physical heterogeneity of habitats within those provinces. Ecological theory is then used to identify the scale and placement of MPAs, aiming to be the minimum spatial requirements that would satisfy the principles for a representative system: comprehensiveness, adequacy and representativeness (CAR). We apply the procedure to eastern Antarctica, a region with spatially-restricted sampling of most biota. We use widely available satellite and model data to identify a number of large areas that are likely to encompass important areas for inclusion in a RSMPA. Three large areas are identified for their pelagic and benthic values as well as their suitability as climate change refugia and reference areas. Four other areas are identified specifically for their benthic values. These areas would need to be managed to maintain these values but we would expect them to be refined over time as more knowledge becomes available on the specific location and spatial extent of those values.

This dataset contains species identifications of benthic worms collected during survey TAN0713 (R.V. Tangaroa, 7 Oct - 22 Nov 2007). Animals were collected from the Faust and Capel basins and Gifford Guyot with a boxcore, rock dredge, or epibenthic sled. Specimens were lodged at Museum of Victoria in June 2008. Species-level identifications were undertaken by Robin Wilson at the Museum of Victoria and were delivered to Geoscience Australia on 1 Aug 2008. See GA Record 2009/22 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.