This report provides a description of the CERF Marine Biodiversity Hub's survey of the Carnarvon Shelf, Western Australia, in August and September, 2008. The survey was a collaboration between the Australian Institute of Marine Science (AIMS) and Geoscience Australia (GA) aboard RV Solander, as part of the Hub's Surrogates Program. The purpose of field surveys in the Surrogates Program is to collect high-quality, accurately co-located data to enable the robust testing of a range of physical parameters as surrogates of patterns of benthic biodiversity in strategically selected, spatially discrete areas that are representative of much broader benthic environments. The report describes the methods employed in the survey and the datasets collected. Additional processing of most of the physical data (wave and current measurements, multibeam sonar bathymetry and backscatter, sediment grab samples, acoustic sediment profiles) and biological data (towed underwater video and stills photography, bottom sediment samples, near-bottom plankton samples) collected is required before comparative analysis between the data sets can commence. However, a number of initial interpretations of the physical data have been made and examples of the types of biota encountered in the towed video and stills photography and initial interpretations of the benthic communities encountered, are provided. The survey was focussed on three strategically selected study areas on the southern Carnarvon Shelf at Mandu, Point Cloates and Gnaraloo. A small additional area was also examined near the Muiron Islands, in the mouth of Exmouth Gulf, at the end of the survey.

Geoscience Australia has undertaken a classification of biophysical datasets to create seabed habitat maps (termed 'seascapes') for the Australian margin and adjacent sea floor. Seascapes describe a layer of ecologically meaningful biophysical properties that spatially represents potential seabed habitats. Each seascape area corresponds to a region of the seabed that contains similar biophysical properties and, by association, potential habitats and communities. This dataset is a seascape classification for the on-shelf zone of the North-west bioregion. The on-shelf zone is separated from the off-shelf zone due to the availability of the effective disturbance layer for the on-shelf zone only. Also, a higher resolution sea floor temperature layer has been used in the on-shelf analysis.

Three areas in the Torres Strait-Gulf of Papua region were selected for detailed study of sediments and benthic fossil biota. These areas form a transect across the shelf from the Fly River Delta to the shelf edge, near the northern extremity of the Great Barrier Reef. The Torres Strait-Gulf of Papua shelf is a shallow, low-gradient platform, where the shelf edge occurs between 120 and 140 m depth. In the study area, where the sediments range from muddy to gravelly carbonate sands, the sediment deposition rates are low and the relict content of sediment is often high. The three areas show distinct differences in benthic foraminiferal assemblages as indicated by relative abundances at the order level, as well as distribution patterns of individual species; these differences are also reflected in the total microbiotic communities. Given the high relict content in the surface material across these sites, a foraminiferal preservation scale was developed to assess the extent of reworking. Taphonomic features indicate that abrasion is the main factor affecting preservation. Despite poor preservation of the foraminiferal tests, the benthic foraminiferal species have a strong correlation to water depth, indicating that transportation pathways are short. Application of multivariate statistics to analyze the relationship between environmental attributes and the distributions of the microbiota and foraminiferal species indicates the additional importance of factors including percent carbonate mud, percent gravel, organic carbon flux, temperature, salinity and mean grain size. The benthic foraminifera produce a much stronger correlation to the environmental variables than the microbiota, indicating that these organisms can provide a detailed assessment of habitat types.

Explaining spatial variation and habitat complexity of benthic habitats from underwater video through the use of maps. Different methodologies currently used to process and analyse percent cover of benthic organisms from underwater video will be addressed and reviewed.

Physical and biological characteristics of benthic communities on the George V Shelf have been analysed from underwater camera footage collecting during Aurora Australis voyages in 2007/08 and 2010/11. The 2007/08 data revealed a high degree of variability in the benthic communities across the shelf, with the benthic habitats strongly structured by physical processes. Iceberg scouring recurs over timescales of years to centuries along shallower parts of this shelf, creating communities in various stages of maturity and recolonisation. Upwelling of modified circumpolar deep water (MCDW) onto the outer shelf and cross-shelf flow of high salinity shelf water (HSSW) create spatial contrasts in nutrient and sediment supply, which are largely reflected in the distribution of deposit and filter feeding communities. Long term cycles in the advance and retreat of icesheets (over millennial scales) and subsequent focussing of sediments in troughs such as the Mertz Drift create patches of consolidated and soft sediments, which also provide distinct habitats for colonisation by different biota. These interacting physical processes of iceberg scouring, current regimes and depositional environments, in addition to water depth, are important factors in the structure of benthic communities across the George V Shelf. In February 2010, iceberg B09B collided with the Mertz Glacier Tongue, removing about 80% or 78km from the protruding tongue. This event provided a rare opportunity to access a region previously covered by the glacier tongue, as well as regions to the east where dense fast ice has built up over decades, restricting access. The 2010/11 voyage imaged 3 stations which were previously beneath the floating tongue, as well as 9 stations covered by multi-year and annual fast ice since the mid 1970s.

Geoscience Australia undertook seabed mapping surveys in the eastern Bonaparte Gulf in 2009/2010 to deliver integrated information relevant to marine biodiversity conservation and offshore infrastructure development. The survey objectives were to characterise the physical, chemical and biological properties of the seabed, document potential geohazards and identify unique or sensitive benthic habitats. Different clustering methods were applied to a 124 sample dataset comprising 74 physical and chemical variables which convey important baseline information about sediment sources, carbon reactivity/redox and sedimentary environments. Results of the UPGMA clustering method were interpreted due to the high cophenetic correlation (0.82), and these clusters discriminated infauna better than clusters based on geomorphology. Major geochemical dimensions evident amongst clusters included grain-size and a cross-shelf transition from Mn and As enrichment (inner shelf) to P enrichment (outer-shelf). Higher P was due to enhanced authigenic-P accumulation. Sponge/gorgonian occurrences were constrained by low Nd/Sr (pointing to a diminishing terrestrial source) and relatively high -15N, and subsurface seepage was shown to enhance the 'terrestrial' (e.g. rare-earth element and Si) signature in outer-shelf sediments. Sponge-dominated shallow bank/terrace clusters with abundant reactive organic matter differentiated on the basis of Si-Al relations (and redox). These habitats shed materials to peripheral Gorgonian-dominated scree environments which had surface-area normalised TOC concentrations that were elevated over usual continental shelf ranges. Trichodesmium were identified as an important source of carbon to inner-shelf plains. Pair-wise ANOSIM results for infauna are brought together in a summary model which highlights the influence of the clusters on benthic biodiversity.

As part of Australian Government's National Low Emission Coal Initiative (NLECI) and National CO2 Infrastructure Plan (NCIP), Geoscience Australia (GA) has been assessing offshore sedimentary basins for their CO2 storage potential. These studies, scheduled for completion by 30 June 2015, aim to identify potential sites for the geological storage of CO2 and provide pre-competitive information for the development of CO2 transport and storage infrastructure near major emission sources. The basins targeted for these studies are the Bonaparte Basin (Petrel Sub-basin), Browse Basin, Perth Basin (Vlaming Sub-basin) and Gippsland Basin. GA completed a series of marine surveys over the Petrel and Vlaming sub-basins and the Browse Basin during 2012-2013, that acquired 2D reflection seismic, multibeam bathymetry/backscatter and sub-bottom profiling data, and seabed samples and video footages. The datasets have been analysed to inform the assessment of potential CO2 storage capacity and containment for each study area. Integrated interpretation of the seabed, shallow subsurface and deep basin data has assisted the identification of potential fluid migration features that may indicate seal breach and the presence of migration pathways. Data on seabed environments and ecological habitats will provide a baseline for an assessment of the potential impacts of CO2 injection and storage, and associated infrastructure development.

In order to protect the diversity of marine life in Australia's Exclusive Economic Zone (EEZ), the federal parliament has passed the Environmental Protection and Biodiversity Conservation (EPBC) Act 1999. The Act is being implemented through the design of a national representative system of marine protected areas (MPAs) that will place under protection a representative portion of Australia's EEZ by 2012. A total of 13 MPAs have already been nominated for the southeast region in 2006. Limited biological data in Australia's EEZ has resulted in biophysical information compiled by Geoscience Australia being used as a proxy for seabed biodiversity in support of marine conservation planning. Information we use to characterise the seabed includes bathymetry, geomorphology, acoustic properties, sediment properties, slope and sediment mobilisation due to waves and tides. To better characterise habitats on the Australian continental shelf, Geoscience Australia is creating 'seascape' maps (similar to geological facies maps) that integrate these multiple layers of spatial data, and are useful for the prediction of the distribution of biodiversity in Australia's EEZ. This information provides 100% spatial coverage based on objective, multivariate statistical methods and offers certainty for managers and stakeholders including the oil and gas industry, who are involved with designing Australia's national MPA system. Certainty for industries operating in the EEZ is enhanced by a reproducible, science-based approach for identifying conservation priorities and the classification of seafloor types within multiple use areas.

Geoscience Australia carried out marine surveys in Jervis Bay (NSW) in 2007, 2008 and 2009 (GA303, GA305, GA309, GA312) to map seabed bathymetry and characterise benthic environments through co-located sampling of surface sediments (for textural and biogeochemical analysis) and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wave-generated currents. Data and samples were acquired using the Defence Science & Technology Organisation (DSTO) Research Vessel Kimbla. Bathymetric mapping, sampling and tide/wave measurement were concentrated in a 3x5 km survey grid (named Darling Road Grid, DRG) within the southern part of the Jervis Bay, incorporating the bay entrance. Additional sampling and stills photography plus bathymetric mapping along transits was undertaken at representative habitat types outside the DRG. This 42 sample data set comprises the mineraology of surface seabed sediment (~0-2 cm) in Jervis Bay. More information: Radke, L.C., Huang, Z., Przeslawski, R., Webster, I.T., McArthur, M.A., Anderson, T.J., P.J. Siwabessy, Brooke, B. 2011. Including biogeochemical factors and a temporal component in benthic habitat maps: influences on infaunal diversity in a temperate embayment. Marine and Freshwater Research 62 (12): 1432 - 1448. Huang, Z., McArthur, M., Radke, L., Anderson, T., Nichol, S., Siwabessy, J. and Brooke, B. 2012. Developing physical surrogates for benthic biodiversity using co-located samples and regression tree models: a conceptual synthesis for a sandy temperature embayment. International Journal of Geographical Information Science DOI:10.1080/13658816.2012.658808.

National seascapes describing a layer of ecologically-meaningful biophysical properties that spatially represent potential seabed habitats have been derived for the Australian margin and adjacent seafloor. Seascapes were derived separately for the shelf and off-shelf regions due to different data availability. A total of 13 and 9 seascapes were derived for the on-shelf and off-shelf regions, respectively, using the unsupervised ISOCLASS classification in the software package ERMapper. Generally, the on-shelf seascapes divide into two broad latitudinal groups. The southern group (seascapes 1-7) is characterised by sandy, cooler environments relative to the northern group (seascape 9-13) which is characterised by muddier, warmer environments. Seascape 8 occurs predominantly on the west and east margins, separating the two groups. Off-shelf seascapes lack a distinct latitudinal pattern and their distribution is more related to seafloor temperature as a function of depth. For the deep-sea regions on the southern and western margins the seascapes are principally defined by rugosity and primary production. For other areas off-shelf seascape distribution is more complex and related to bathymetry and slope (rugosity).