Geoscience Australia carried out a marine survey on Lord Howe Island shelf (NSW) in 2008 (SS06_2008) to map seabed bathymetry and characterise benthic environments through colocated sampling of surface sediments and infauna, rock coring, observation of benthic habitats using underwater towed video, and measurement of ocean tides and wave generated currents. Subbottom profile data was also collected to map sediment thickness and shelf stratigraphy. Data and samples were acquired using the National Facility Research Vessel Southern Surveyor. Bathymetric data from this survey was merged with other preexisting bathymetric data (including LADS) to generate a grid covering 1034 sq km. As part of a separate Geoscience Australia survey in 2007 (TAN0713), an oceanographic mooring was deployed on the northern edge of Lord Howe Island shelf. The mooring was recovered during the 2008 survey following a 6 month deployment. The "2461_ss062008" folder contains raw multibeam backscatter data of the Lord Howe Rise. The raw multibeam backscatter data were collected along survey lines using SIMRAD EM300 from aboard RV Southern Surveyor

Geoscience Australia carried out marine surveys in southeast Tasmania in 2008 and 2009 (GA0315) to map seabed bathymetry and characterise benthic environments through observation of habitats using underwater towed video. Data was acquired using the Tasmania Aquaculture and Fisheries Institute (TAFI) Research Vessel Challenger. Bathymetric mapping was undertaken in seven survey areas, including: Freycinet Pensinula (83 sq km, east coast and shelf); Tasman Peninsula (117 sq km, east coast and shelf); Port Arthur and adjacent open coast (17 sq km); The Friars (41 sq km, south of Bruny Island); lower Huon River estuary (39 sq km); D Entrecastreaux Channel (7 sq km, at Tinderbox north of Bruny Island), and; Maria Island (3 sq km, western side). Video characterisations of the seabed concentrated on areas of bedrock reef and adjacent seabed in all mapped areas, except for D Entrecastreaux Channel and Maria Island. The "challenger" folder contains processed multibeam backscatter data of the South East Tasmania Shelf. The SIMRAD EM3002 multibeam backscatter data were processed using the CMST_GA MB Process, a multibeam processing toolbox codeveloped by Geoscience Australia and Curtin University of Technology.

This dataset contains processed and raw backscatter data in matlab format produced by the CMST-GA MB Toolbox from various swath surveys in and around Australian waters.

This study used angular response curves of multibeam backscatter data to predict the distributions of seven seabed cover types in an acoustically-complex area. Several feature analysis approaches on the angular response curves were examined. A Probability Neural Network model was chosen for the predictive mapping. The prediction results have demonstrated the value of angular response curves for seabed mapping with a Kappa coefficient of 0.59. Importantly, this study demonstrated the potential of various feature analysis approaches to improve the seabed mapping. For example, the approach to derive meaningful statistical parameters from the curves achieved significant feature reduction and some performance gain (e.g., Kappa = 0.62). The first derivative analysis approach achieved the best overall statistical performance (e.g., Kappa = 0.84); while the approach to remove the global slope produced the best overall prediction map (Kappa = 0.74). We thus recommend these three feature analysis approaches, along with the original angular response curves, for future similar studies.

Geoscience Australia provides spatial information of seabed environment to support Australian marine zone management. Central to this approach is the prediction of Australia's seabed biodiversity from spatially continuous data of seabed biophysical properties. Seabed hardness is an important environmental property for predicting marine biodiversity and is often inferred from multibeam backscatter data. Although seabed hardness can be measured based on video images, they are only available at a limited number of sampled locations. In this study, we attempt to predict the spatial distribution of seabed hardness using random forest based on video classification and available marine environmental properties. We illustrate the effects of cross-validation methods including a new cross-validation function on the selection of optimal predictive models. We also test the effects of various predictor sets on the predictive accuracy. This study provides an example for predicting the spatial distribution of environmental properties using random forest in R.

Deep sea environments occupy much of the sea floor, yet little is known about diversity patterns of biological assemblages from these environments. Physical mapping technologies and their availability are increasing rapidly. Sampling deep-sea biota over vast areas of the deep sea, however, is time consuming, difficult, and costly. Consequently, the growing need to manage and conserve marine resources, particularly deep sea areas that are sensitive to anthropogenic disturbance and change, is leading the promotion of physical data as surrogates to predict biological assemblages. However, few studies have directly examined the predictive ability of these surrogates. The physical environment and biological assemblages were surveyed for two adjacent areas - the western flank of Lord Howe Rise (LHR) and the Gifford Guyot - spanning combined water depths of 250 to 2,200 m depth on the northern part of the LHR, in the southern Pacific Ocean. Multibeam acoustic surveys were used to generate large-scale geomorphic classification maps that were superimposed over the study area. Forty two towed-video stations were deployed across the area capturing 32 hours of seabed video, 6,229 still photographs, that generated 3,413 seabed characterisations of physical and biological variables. In addition, sediment and biological samples were collected from 36 stations across the area. The northern Lord Howe Rise was characterised by diverse but sparsely distributed faunas for both the vast soft-sediment environments as well as the discrete rock outcrops. Substratum type and depth were the main variables correlated with benthic assemblage composition. Soft-sediments were characterised by low to moderate levels of bioturbation, while rocky outcrops supported diverse but sparse assemblages of suspension feeding invertebrates, such as cold water corals and sponges which in turn supported epifauna, dominated by ophiuroids and crinoids. While deep environments of the LHR flank .

Geoscience Australia carried out marine surveys in Jervis Bay (NSW) in 2007, 2008 and 2009 (GA303, GA305, GA309, GA312) to map seabed bathymetry and characterise benthic environments through colocated sampling of surface sediments (for textural and biogeochemical analysis) and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wave generated currents. Data and samples were acquired using the Defence Science and Technology Organisation (DSTO) Research Vessel Kimbla. Bathymetric mapping, sampling and tide/wave measurement were concentrated in a 3x5 km survey grid (named Darling Road Grid, DRG) within the southern part of the Jervis Bay, incorporating the bay entrance. Additional sampling and stills photography plus bathymetric mapping along transits was undertaken at representative habitat types outside the DRG. The "kimbla" folder contains raw multibeam backscatter data from four surveys archived seperately in 0303_jervis_trials, 0305_jervisbay2, 0311_jervisbay3 and 0313_jervis_trials4. The raw multibeam backscatter data were collected along survey lines using GAs Kongsberg SIMRAD EM3002 in single head and dual head configuration from aboard Work Boat Kimbla.

A seabed mapping survey over a series of carbonate banks, intervening channels and surrounding sediment plains on the Van Diemen Rise in the eastern Joseph Bonaparte Gulf was completed under a Memorandum of Understanding between Geoscience Australia and the Australian Institute of Marine Sciences. The survey obtained detailed geological (sedimentological, geochemical, geophysical) and biological data (macro-benthic and infaunal diversity, community structure) for the banks, channels and plains to establish the late-Quaternary evolution of the region and investigate relationships between the physical environment and associated biota for biodiversity prediction. The survey also permits the biodiversity of benthos of the Van Diemen Rise to be put into a biogeographic context of the Arafura-Timor Sea and wider northern Australian marine region. Four study areas were investigated across the outer to inner shelf. Multibeam sonar data provide 100 per cent coverage of the seabed for each study area and are supplemented with geological and biological samples collected from 63 stations. In a novel approach, geochemical data collected at the stations provide an assessment of sediment and water quality for surrogacy research. Oceanographic data collected at four stations on the Van Diemen Rise will provide an understanding of the wave, tide and ocean currents as well as insights into sediment transport. A total of 1,154 square kilometres of multibeam sonar data and 340 line-km of shallow (<100 mbsf) sub-bottom profiles were collected.

Geoscience Australia carried out marine surveys in Jervis Bay (NSW) in 2007, 2008 and 2009 (GA303, GA305, GA309, GA312) to map seabed bathymetry and characterise benthic environments through colocated sampling of surface sediments (for textural and biogeochemical analysis) and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wavegenerated currents. Data and samples were acquired using the Defence Science and Technology Organisation (DSTO) Research Vessel Kimbla. Bathymetric mapping, sampling and tide/wave measurement were concentrated in a 3x5 km survey grid (named Darling Road Grid, DRG) within the southern part of the Jervis Bay, incorporating the bay entrance. Additional sampling and stills photography plus bathymetric mapping along transits was undertaken at representative habitat types outside the DRG. The "kimbla" folder contains processed multibeam backscatter data of Jarvis Bay. The SIMRAD EM3002 and EM3002D multibeam backscatter data were processed using the CMST-GA MB Process, a multibeam processing toolbox codeveloped by Geoscience Australia and Curtin University of Technology.

Geoscience Australia carried out a marine survey on Carnarvon shelf (WA) in 2008 (SOL4769) to map seabed bathymetry and characterise benthic environments through colocated sampling of surface sediments and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wave generated currents. Data and samples were acquired using the Australian Institute of Marine Science (AIMS) Research Vessel Solander. Bathymetric mapping, sampling and video transects were completed in three survey areas that extended seaward from Ningaloo Reef to the shelf edge, including: Mandu Creek (80 sq km); Point Cloates (281 sq km), and; Gnaraloo (321 sq km). Additional bathymetric mapping (but no sampling or video) was completed between Mandu creek and Point Cloates, covering 277 sq km and north of Mandu Creek, covering 79 sq km. Two oceanographic moorings were deployed in the Point Cloates survey area. The survey also mapped and sampled an area to the northeast of the Muiron Islands covering 52 sq km. The "0308_carnarvon_shelf" folder contains raw multibeam backscatter data of the Carnarvorn Shelf. The raw multibeam backscatter data were collected along survey lines using GAs Kongsberg SIMRAD EM3002 in single head configuration from aboard RV Solander.