Permeable, sandy sediments cover most of the continental shelf. The important role of pore-water advective flow on biogeochemical processes in these sediments has been highlighted in recent studies. Such flow can be driven by wave-action, water-density and interactions between topography and bottom currents, in addition to biological activity, and can create spatially complex and highly dynamic benthic environments in which processes vary on timescales ranging from minutes to months. It is well known that the patchiness of soft sediment (organic matter/bacteria, particle diversity, redox) is likely to be a major determinant of species diversity, but previous studies have not specifically defined patches based on a range of biologically-relevant physico-chemical variables, nor observed how patches change across time. This study, as part of the Surrogates Program in the Commonwealth Environmental Research Facilities Marine Biodiversity Hub, investigated temporal changes in the geochemistry, physical sediments and infauna of sandy sediments in Jervis Bay at two times.

Explaining spatial variation and habitat complexity of benthic habitats from underwater video through the use of maps. Different methodologies currently used to process and analyse percent cover of benthic organisms from underwater video will be addressed and reviewed.

The National Geochemical Survey of Australia (NGSA) project (www.ga.gov.au/ngsa) was part of Geoscience Australia's Onshore Energy Security Program 2006-2011 and was carried out in collaboration with the geological surveys of all States and the Northern Territory. It delivered (1) Australia's first national geochemical atlas, (2) an underpinning geochemical database, and (3) a series of reports. Catchment outlet sediments (similar to floodplain sediments in most cases) were sampled in 1186 catchments covering ~80% of the country (average sample density 1 sample per 5500 km2). Samples were collected at 2 depths each sieved to 2 grain size fractions. Chemical analyses carried out on the samples fall into 3 main categories: (1) total (using mainly XRF and total digestion ICP-MS), (2) aqua regia, and (3) Mobile Metal Ion® element contents. Here results of robust multi-variate analysis performed on the total element content data are reported. After clr-transformation of the raw data, a principal components (PCs) analysis was undertaken. The first five PCs account for 59.2% of the total variance. For instance, PC1 (27.9%) is dominated by Mg, Ca, S and Sr (negative loadings) and rare earth elements and Y (positive loadings). Thus, the PC1 map should reflect the distribution of carbonates and gypsum as well as resistate minerals typical of highly weathered environments and heavy mineral sands. By comparing this to known occurrences of rock and soil types, weathering regimes, etc. inferences can be drawn about the major, continental-scale processes influencing the distribution of chemical elements in Australia's surficial environment.

From 1995 to 2000 information from the federal and state governments was compiled for Comprehensive Regional Assessments (CRA), which formed the basis for Regional Forest Agreements (RFA) that identified areas for conservation to meet targets agreed by the Commonwealth Government with the United Nations. These 5 CDs were created as part of GA's contribution to the NE Victoria CRA. CD1 contains ArcView Legends and Projects, data coverages, shapefiles, final Exec. Summary and Minerals Technical Reports, and final figures and maps. CD2 contains final reports, metadata, model descriptions, and all associated maps and figures. CD3 contains Landsat, Magnetic and Radiometric images, AcrInfo grids, and unused ArcInfo AMLs and Graphic files that were intended for map creation. CD4 contains original data supplied by custodians, staff versions of data and projects, and various edited versions of covers and shapefiles. CD5 contains integration data used during Directions report analysis.

From 1995 to 2000 information from the federal and state governments was compiled for Comprehensive Regional Assessments (CRA), which formed the basis for Regional Forest Agreements (RFA) that identified areas for conservation to meet targets agreed by the Commonwealth Government with the United Nations. These 3 CDs were created as part of GA's contribution to the Tasmania CRA. CD1 contains final versions of all data coverages and shapefiles used in the project, and final versions of documents provided for publishing. CD2 contains Published Graphics files in ArcInfo (.gra), postscript (.ps) and Web ready (.gif) formats. CD3 contains all Geophysical Images and Landsat data.

The Coorong, a shallow coastal lagoon at the mouth of the Murray River, has had a significant decline in water quality over the last 15 years because of reduced freshwater inflows. Salinity has increased throughout the lagoon and currently ranges between 60 and 190 psu depending on the proximity to the Murray Mouth and the season. Although nutrient inflow has been negligible in recent years, the lagoon is considered euthrophic. This study aimed to identify the source of nutrients and the biogeochemical processes that transform them. The key findings were: 1. Groundwater discharge is likely to be an important nutrient source 2. Nitrogen appears to be the nutrient limiting primary production 3. Decomposition of organic matter in the sediments is highly seasonal with much higher rates in the summer.

The Tasmanian Shelf survey was conducted on the Challenger in collaboration with the Tasmanian Aquaculture and Fisheries Institute between the 13-16th June, 2008 and 23rd February to the 14th March, 2009 (GA survey #0315). The survey was operated as part of the Surrogates Program of the CERF Marine Biodiversity Hub. The objective was to collect co-located physical and biological data to enable the robust testing of a range of physical parameters as surrogates of benthic biodiversity patterns. A total of 55 video transects were surveyed from five study areas (Tasman Peninsula, Freycinet Peninsula, The Friars, Huon river, and Port Arthur channel) in water depths ranging from 15-110 m. Video was recorded to mini DV tapes, and copied to digital format. For further information on this survey please refer to the post-survey report (GA Record 2009/043 - Geocat #69755).

Presentation to be delivered at the Western Australian Marine Science Institution Symposium, Fremantle, 21 February Abstract text: Geoscience Australia, as the Australian Government's geoscience agency, has a long history of marine environment mapping and research on the North West Shelf of Australia. In recent times, several data acquisition surveys have been completed and subsequent interpretive products have been produced under Commonwealth Government programmes, including: the Offshore Energy Security Program (2006-2011); the Marine Biodiversity Hub under the Commonwealth Environmental Research Facilities (CERF) and the National Environmental Research Program (NERP), and; the National CO2 Infrastructure Plan (NCIP, 2011-15). Collaborations, such as those facilitated by CERF and NERP, and with the Australian Institute of Marine Science (AIMS), have resulted in further work in the region. Areas of investigation have included the North Perth Basin, Bonaparte Gulf and Timor Sea. Using data from these surveys and other sources, GA is continuing to develop regional-scale seabed datasets, including bathymetry, geomorphology, sediment properties, seabed disturbance and seabed hardness that are publicly available via the internet. A pilot program was started in 2010 to collate and archive environmental data generated by the offshore petroleum industry, with a focus on the North West Shelf. Geoscience Australia is currently undertaking marine surveys to provide seabed environmental information to support assessments of the CO2 storage potential of several offshore sedimentary basins under NCIP. A marine survey over the Browse Basin in May 2013, to be undertaken in collaboration with the AIMS, will acquire high-resolution bathymetry and information on seabed and shallow subsurface geology and ecology. Follow-up surveys are also proposed during 2013-2015. The Browse survey results will be publicly released as a data package integrating existing and the newly acquired seabed data, and in a report to the Department of Resources Energy and Tourism on the CO2 storage potential of selected areas of the Browse Basin.

An international effort is underway to establish a representative system of marine protected areas (MPAs) in the Southern Ocean to help provide for the long-term conservation of marine biodiversity in the region. Critical to this undertaking is understanding the distribution of benthic assemblages. Our aim is to identify the areas where benthic marine assemblages are likely to differ in the Southern Ocean including near-shore Antarctica. We achieve this by using a hierarchical spatial classification of ecoregions, bathomes and environmental types. Ecoregions are defined according to available data on biogeographic patterns and environmental drivers on dispersal. Bathomes are identified according to depth strata defined by known species distributions. Environmental types are uniquely classified according to the geomorphic features found within the bathomes in each ecoregion. We identified 23 ecoregions and nine bathomes. From a set of 30 types of geomorphic features of the seabed, 846 unique environmental types were classified for the Southern Ocean. We applied the environmental types as surrogates of different assemblages of biodiversity to assess the representativeness of MPAs. We found that for existing MPAs no ecoregion has their full range of environmental types represented and 12 ecoregions have no MPAs. Current MPA planning processes, if implemented, will substantially increase the representation of environmental types particularly within 7 ecoregions. To meet internationally agreed conservation goals, additional MPAs will be needed. To assist with this process, we identified 119 locations with spatially restricted environmental types, which should be considered for inclusion in future MPAs.

Concern about the impact of ocean acidification on organisms secreting high magnesium calcite skeletons has led to renewed interest in the mineralogy of these organisms. The identification of minerals making up the skeletons of tropical coralline algae, and in particular the determination of the Mg-content of calcite, is most commonly performed with X-ray diffraction. This method, based on XRD peak position, attracted criticism in the past because it produced Mg-contents that were in some cases lower compared to those based on chemical analyses of the bulk sample (in solution). The recent discovery of dolomite and magnesite in living coralline algae skeletons in addition to Mg-calcite explained this issue, and it is our goal in the present study to reinstate XRD as a reliable, quick and affordable method for the study of the mineral make-up of coralline algae species. In this paper we review the history of mineralogical analyses on tropical coralline algae and identify physical preparation methods that can affect results. We build on existing XRD methods to develop simple sampling and analytical methods to identify the presence of dolomite and magnesite, and numerically assess peak asymmetry that is caused by the overlapping reflections of calcite, dolomite and magnesite. These methods do not require specialist crystallographic knowledge or expensive or time consuming processes. The additional information our methods produce can be used to study intra-cellular calcification, and helps to rapidly assess and compare the mineral make-up of large numbers of samples. We conclude that XRD should be an integral part of any mineralogical analysis of coralline algae skeletons, which may be composed of not only Mg-calcite (Ca1.0-0.6Mg0-0.4CO3), but also dolomite (Ca0.5Mg0.5CO3), magnesite (MgCO3) and aragonite (CaCO3).