Seabed mapping studies are supporting the regulation and management of a range of competing industries in northern Australia. These industries include fishing and an expanding offshore energy sector, with new developments to include seabed pipelines and subsurface storage of CO2. Set in tropical waters, the northern Australian shelf is also recognised in marine management plans for its high-value marine biodiversity associated with a complex geomorphology. To reduce uncertainty and risk in the future development and management of this region, the Australian Government is supporting seabed mapping research under a series of programs aimed at delivering integrated information relevant to infrastructure development (Offshore Energy Security Program, 2007-2010), offshore storage of CO2 in deep sedimentary basins (National CO2 Infrastructure Program, 2011-2015) and biodiversity conservation of the marine estate (National Environmental Research Program, 2011-2014). In 2009 and 2010, Geoscience Australia undertook collaborative seabed mapping surveys to deliver to these programs, with an initial focus on the eastern Joseph Bonaparte Gulf (Timor Sea). Objectives were to: characterise the physical and biological properties of the seabed in representative areas; assess potential geohazards, and; identify unique or sensitive benthic habitats.

A seabed mapping survey over a series of carbonate banks, intervening channels and surrounding sediment plains on the Van Diemen Rise in the eastern Joseph Bonaparte Gulf was completed under a Memorandum of Understanding between Geoscience Australia and the Australian Institute of Marine Sciences. The survey obtained detailed geological (sedimentological, geochemical, geophysical) and biological data (macro-benthic and infaunal diversity, community structure) for the banks, channels and plains to establish the late-Quaternary evolution of the region and investigate relationships between the physical environment and associated biota for biodiversity prediction. The survey also permits the biodiversity of benthos of the Van Diemen Rise to be put into a biogeographic context of the Arafura-Timor Sea and wider northern Australian marine region. Four study areas were investigated across the outer to inner shelf. Multibeam sonar data provide 100 per cent coverage of the seabed for each study area and are supplemented with geological and biological samples collected from 63 stations. In a novel approach, geochemical data collected at the stations provide an assessment of sediment and water quality for surrogacy research. Oceanographic data collected at four stations on the Van Diemen Rise will provide an understanding of the wave, tide and ocean currents as well as insights into sediment transport. A total of 1,154 square kilometres of multibeam sonar data and 340 line-km of shallow (<100 mbsf) sub-bottom profiles were collected.

In this study, we aim to identify the most appropriate methods for spatial interpolation of seabed sand content for the AEEZ using samples extracted on August 2010 from Geoscience Australia's Marine Samples Database. The predictive accuracy changes with methods, input secondary variables, model averaging, search window size and the study region but the choice of mtry. No single method performs best for all the tested scenarios. Of the 18 compared methods, RFIDS and RFOK are the most accurate methods in all three regions. Overall, of the 36 combinations of input secondary variables, methods and regions, RFIDS, 6RFIDS and RFOK were among the most accurate methods in all three regions. Model averaging further improved the prediction accuracy. The most accurate methods reduced the prediction error by up to 7%. RFOKRFIDS, with a search window size of 5, an mtry of 4 and more realistic predictions in comparison with the control, is recommended for predicting sand content across the AEEZ if a single method is required. This study provides suggestions and guidelines for improving the spatial interpolations of marine environmental data.

This resource contains surface sediment data for Bynoe Harbour collected by Geoscience Australia (GA), the Australian Institute of Marine Science (AIMS) and Department of Land Resource Management (Northern Territory Government) during the period from 2-29 May 2016 on the RV Solander (survey SOL6432/GA4452). This project was made possible through offset funds provided by INPEX-led Ichthys LNG Project to Northern Territory Government Department of Land Resource Management, and co-investment from Geoscience Australia and Australian Institute of Marine Science. The intent of this four year (2014-2018) program is to improve knowledge of the marine environments in the Darwin and Bynoe Harbour regions by collating and collecting baseline data that enable the creation of thematic habitat maps that underpin marine resource management decisions. The specific objectives of the survey were to: 1. Obtain high resolution geophysical (bathymetry) data for outer Darwin Harbour, including Shoal Bay; 2. Characterise substrates (acoustic backscatter properties, grainsize, sediment chemistry) for outer Darwin Harbour, including Shoal Bay; and 3. Collect tidal data for the survey area. Data acquired during the survey included: multibeam sonar bathymetry and acoustic backscatter; physical samples of seabed sediments, underwater photography and video of grab sample locations and oceanographic information including tidal data and sound velocity profiles. This dataset comprises total chlorin concentrations, chlorin indices and porosity measured on seabed sediments. A detailed account of the survey is provided in Siwabessy, P.J.W., Smit, N., Atkinson, I., Dando, N., Harries, S., Howard, F.J.F., Li, J., Nicholas W.A., Picard, K., Radke, L.C., Tran, M., Williams, D. and Whiteway, T., 2016. Bynoe Harbour Marine Survey 2017: GA4452/SOL6432 Post-survey report. Record 2017/04. Geoscience Australia, Canberra. Thanks to the crew of the RV Solander for help with sample collection, Matt Carey, Craig Wintle and Andrew Hislop from the Observatories and Science Support at Geoscience Australia for technical support and Jodie Smith for reviewing the data. This dataset is published with the permission of the CEO, Geoscience Australia

An integrated analysis of geoscience information and benthos data has been used to identify benthic biotopes (seafloor habitats and associated communities) in the nearshore marine environment of the Vestfold Hills, East Antarctica. High-resolution bathymetry and backscatter data were collected over 42km2 to depths of 215 m using a multibeam sonar system. Epibenthic community data and in situ observations of seafloor morphology, substrate composition and bedforms were obtained from towed underwater video. Analysis of the datasets was used to identify statistically distinct benthic assemblages and describe the physical habitat characteristics related to each assemblage, with seven discrete biotopes identified. The biotopes include a range of habitat types including shallow coastal embayments and rocky outcrops which are dominated by dense macroalgae communities, and deep muddy basins which are dominated by mixed invertebrate communities. Transition zones comprising steep slopes provide habitat for sessile invertebrate communities. Areas of flat sandy plains are relatively barren. The relationship between benthic community composition and environmental parameters is complex with many variables (e.g. depth, substrate type, longitude, latitude and slope) contributing to differences in community composition. Depth and substrate type were identified as the main drivers of benthic community composition, however, depth is likely a proxy for other unmeasured depth-dependent parameters such as light availability, frequency of disturbance by ice, currents and/or food availability. Sea ice cover is also an important driver and the benthic community in areas of extended sea ice cover is comprised of sessile invertebrates and devoid of macroalgae. This is the first study that has used an integrated sampling approach based on multibeam sonar and towed underwater video to investigate benthic assemblages across a range of habitats in a nearshore marine environment in East Antarctica. This study demonstrates the efficacy of using multibeam sonar and towed video systems to survey large areas of the seafloor and to collect non-destructive high-resolution data in the sensitive Antarctic marine environment. The multibeam data provide a physical framework for understanding benthic habitats and the distribution of benthic communities. This research provides a baseline for assessing natural variability and human induced change on nearshore marine benthic communities (Australian Antarctic Science Project AAS-2201), contributes to Geoscience Australia's Marine Environmental Baseline Program, and supports Australian Government objectives to manage and protect the Antarctic marine environment.

Flythrough movie showing the bathymetry of the continental shelf within the Oceanic Shoals Commonwealth Marine Reserve (Timor Sea), highlighting carbonate banks and pinnacles as benthic habitats. The bathymetric image is derived from multibeam sonar collected in 2012 using a 300 kHz Simrad EM3002 system on RV Solander and gridded at 2 m resolution. The Oceanic Shoals Reserve is a study site for the Marine Biodiversity Research Hub, funded through the National Environmental Research Program. Survey work was carried out as a collaboration between Geoscience Australia, the Australian Institute of Marine Science and University of Western Australia. Further information is provided in GA Record 2013/38.

Australia is increasingly recognised as a global hotspot for sponge biodiversity, with sponges playing key roles in habitat provision, water quality, bioerosion, and biodiscovery. Despite the intense focus on marine resource management in northern Australia, there is a large knowledge gap about sponge communities in this region. This study focuses on shelf environments of the Timor Sea, in particular the Van Diemen Rise and Londonderry Rise which are characterised by extensive carbonate terraces, banks and reefs, separated by soft sediment plains and deeply incised valleys. These carbonate terraces and banks are recognised as a Key Ecological Feature (KEF) in the marine region plans for northern Australia (North and Northwest Marine Regions) and are in part incorporated into the Oceanic Shoals Commonwealth Marine Reserve. To support the management of this marine reserve and its associated KEF, we use new datasets to investigate regional patterns in sponge assemblages and their relationships to seabed geomorphology. To do this, we use sponge assemblage data and multibeam-derived variables (depth, backscatter, slope, geomorphic feature) from seven survey areas located on the Van Diemen Rise (four sites) and Londonderry Rise (three sites), spanning approximately 320 km in an east-west direction. The dataset was collected during three collaborative surveys undertaken in 2009, 2010 and 2012 by Geoscience Australia, the Australian Institute of Marine Science and the Museum and Art Gallery of the Northern Territory as part of the Australian Government's Offshore Energy Security Initiative and the National Environmental Research Program Marine Biodiversity Hub. All surveys returned geophysical, biological, geochemical, and sedimentological data. Benthic biota were collected with a benthic sled across a range of geomorphic features (bank, terrace, ridge, plain, valley) identified from high-resolution multibeam sonar. Sponges were then taxonomically identified to 350 species, with the species accumulation curve indicating there may be over 900 sponge species in the region. Sponge assemblages were different between the Van Diemen Rise and Londonderry Rise, as well as between individual banks in the same area, indicating that different suites of species occurred at regional (east-west) and local (between banks) scales. Relationships between sponges and other multibeam-derived variables are more complex and warrant further research. The current study will help: i) facilitate integrated marine management by providing a baseline species inventory; ii) support the listing of carbonate banks of the Timor Sea shelf as a Key Ecological Feature, and; iii) inform future monitoring of marine protected area performance, particularly for areas of complex seabed geomorphology.

Fisheries groups worldwide are concerned that seismic operations negatively affect catch rates within a given area, although there is a lack of field-based scientific evidence. In southeast Australia, marine seismic surveys have been blamed for mass mortalities of benthic invertebrates including the commercial scallop Pecten fumatus. Geoscience Australia conducted a 2-D seismic survey in this region in April 2015, thereby presenting an opportunity to conduct field-based experiments investigating the potential impacts on marine organisms. Moored hydrophones recorded noise before and during the seismic survey. An Autonomous Underwater Vehicle (AUV) was used to evaluate the effectiveness of seafloor images to support scallop monitoring. In addition, more traditional sampling was undertaken using a commercial scallop dredge from which a variety of biological and biochemical variables were analysed. The AUVs and dredge were deployed at three time periods (before the seismic survey, 2 months after seismic operations ceased, 10 months after seismic operations ceased), although poor-quality AUV images acquired before the survey precluded the analysis of these data. The highest sound exposure level recorded by the hydrophones was 146 dB re 1 µPa2s at 51 m water depth, at a distance of 1.4 km from the airguns. Commercial scallops were not abundant in the study area, and analysis of AUV images revealed no differences in commercial scallop types (live, clapper, dead shell, other) between experimental and control zones. Similarly, analysis of dredged scallops shows no detectable impact due to seismic activity on shell size, meat size and condition, gonad size and condition, and biochemical indices. Both AUV and dredging data showed strong spatial patterns, with significant differences between sites. Our study confirms previous work showing no evidence of immediate mortality on scallops in the field, and it expands this to include no evidence of long-term or sub-lethal effects. Negative impacts are currently confined to laboratory settings with unrealistic sound exposures. If short-term effects are investigated, we recommend a focus on the underlying mechanisms of potential impacts (i.e. physiological responses), rather than gross metrics such as mortality or size. Physiological responses to airgun sound may not be as immediately obvious as mortality or behavioural responses, but they are equally important to provide early indications of negative effects, as well as to explain the underlying mechanisms behind mortality events and reduced catch.

This study used angular response curves of multibeam backscatter data to predict the distributions of seven seabed cover types in an acoustically-complex area. Several feature analysis approaches on the angular response curves were examined. A Probability Neural Network model was chosen for the predictive mapping. The prediction results have demonstrated the value of angular response curves for seabed mapping with a Kappa coefficient of 0.59. Importantly, this study demonstrated the potential of various feature analysis approaches to improve the seabed mapping. For example, the approach to derive meaningful statistical parameters from the curves achieved significant feature reduction and some performance gain (e.g., Kappa = 0.62). The first derivative analysis approach achieved the best overall statistical performance (e.g., Kappa = 0.84); while the approach to remove the global slope produced the best overall prediction map (Kappa = 0.74). We thus recommend these three feature analysis approaches, along with the original angular response curves, for future similar studies.

The northern Australian continental shelf is the focus for an expanding offshore energy industry and is also recognised for its high-value marine biodiversity in regional marine management plans. To reduce uncertainty and risk in the future development and management of the region, Geoscience Australia has an ongoing program to provide integrated marine environmental information to support both activities. The program includes collation of existing marine data and acquisition of new high resolution datasets. In 2009 and 2010, marine surveys in eastern Joseph Bonaparte Gulf were completed to characterise the seabed in representative areas, assess potential for geohazards and identify unique or sensitive benthic habitats. Data acquired included multibeam sonar bathymetry (~1900 km2), shallow (<120 m) sub-bottom profiles, sediment grabs and shallow (2-5 m) cores, towed video and epibenthic sleds. Geomorphic features mapped range from expansive soft-sediment plains, to isolated carbonate banks that rise tens of metres and incised valleys up to 200 m deep. Each feature is characterised by a distinctive biota, ranging from coral and sponge gardens on banks to diverse infaunal communities across plains. Geohazards include potential for localised slumping in valleys and escape of subsurface fluid/gas from plains and valley floors. To facilitate uptake of this information, results are integrated as generalised graphical models representing key spatial patterns of shelf ecosystems. This work has led to further work in targeted areas of the Gulf as part of a new four-year Australian Government program to inform geological and environmental assessments of offshore basins for CO2 storage.