Marine physical and geochemical data can be valuable in predicting the potential distributions and assemblages of marine species, acting as surrogate measures of biodiversity. The results of surrogacy analysis can also be useful for identifying ecological processes that link physical environmental attributes to the distribution of seabed biota. This paper reports the results of a surrogacy study in Jervis Bay, a shallow-water, sandy marine embayment in south-eastern Australia. A wide range of high-resolution co-located physical and biological data were employed, including multibeam bathymetry and backscatter data and their derivatives, parameters that describe seabed sediment and water column physical characteristics, seabed exposure, and infauna species. The study applied three decision tree models and a robust model selection process. The results show that the model performance for three diversity indices and seven out of eight infauna species range from acceptable to good. Important surrogates for infauna diversity and species distributions within the mapped area are broad-scale habitat type, seabed exposure, sediment nutrient status, and seabed rugosity and heterogeneity. The results demonstrate that abiotic environmental parameters of a sandy embayment can be used to effectively predict infauna species distributions and biodiversity patterns. International Journal of Geographical Information Science

Geoscience Australia carried out marine surveys in Jervis Bay (NSW) in 2007, 2008 and 2009 (GA303, GA305, GA309, GA312) to map seabed bathymetry and characterise benthic environments through co-located sampling of surface sediments (for textural and biogeochemical analysis) and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wave-generated currents. Data and samples were acquired using the Defence Science & Technology Organisation (DSTO) Research Vessel Kimbla. Bathymetric mapping, sampling and tide/wave measurement were concentrated in a 3x5 km survey grid (named Darling Road Grid, DRG) within the southern part of the Jervis Bay, incorporating the bay entrance. Additional sampling and stills photography plus bathymetric mapping along transits was undertaken at representative habitat types outside the DRG. This 42 sample data set comprises the mineraology of surface seabed sediment (~0-2 cm) in Jervis Bay. More information: Radke, L.C., Huang, Z., Przeslawski, R., Webster, I.T., McArthur, M.A., Anderson, T.J., P.J. Siwabessy, Brooke, B. 2011. Including biogeochemical factors and a temporal component in benthic habitat maps: influences on infaunal diversity in a temperate embayment. Marine and Freshwater Research 62 (12): 1432 - 1448. Huang, Z., McArthur, M., Radke, L., Anderson, T., Nichol, S., Siwabessy, J. and Brooke, B. 2012. Developing physical surrogates for benthic biodiversity using co-located samples and regression tree models: a conceptual synthesis for a sandy temperature embayment. International Journal of Geographical Information Science DOI:10.1080/13658816.2012.658808.

This resource contains geochemistry data for the Oceanic Shoals Commonwealth Marine Reserve (CMR) in the Timor Sea collected by Geoscience Australia during September and October 2012 on RV Solander (survey GA0339/SOL5650). This dataset comprises inorganic element data from the fine fraction (Mud: <63um) of the upper ~2cm of seabed sediment. The Oceanic Shoals Commonwealth Marine Reserve survey was undertaken as an activity within the Australian Government's National Environmental Research Program Marine Biodiversity Hub and was the key component of Research Theme 4 - Regional Biodiversity Discovery to Support Marine Bioregional Plans. Hub partners involved in the survey included the Australian Institute of Marine Science, Geoscience Australia, the University of Western Australia, Museum Victoria and the Museum and Art Gallery of the Northern Territory. Data acquired during the survey included: multibeam sonar bathymetry and acoustic backscatter; sub-bottom acoustic profiles; physical samples of seabed sediments, infauna and epibenthic biota; towed underwater video and still camera observations of seabed habitats; baited video observations of demersal and pelagic fish, and; oceanographic measurements of the water column from CTD (conductivity, temperature, depth) casts and from deployment of sea surface drifters. Further information on the survey is available in the post-survey report published as Geoscience Australia Record 2013/38 (Nichol et al. 2013).

Geoscience Australia carried out marine surveys in Jervis Bay (NSW) in 2007, 2008 and 2009 (GA303, GA305, GA309, GA312) to map seabed bathymetry and characterise benthic environments through co-located sampling of surface sediments (for textural and biogeochemical analysis) and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wave-generated currents. Data and samples were acquired using the Defence Science & Technology Organisation (DSTO) Research Vessel Kimbla. Bathymetric mapping, sampling and tide/wave measurement were concentrated in a 3x5 km survey grid (named Darling Road Grid, DRG) within the southern part of the Jervis Bay, incorporating the bay entrance. Additional sampling and stills photography plus bathymetric mapping along transits was undertaken at representative habitat types outside the DRG. This 128 sample data set comprises major, minor and trace elements derived from x-ray fluorescence analysis of surface seabed sediments (~0-2 cm). Sediment surface area data are also presented. More Information: Radke, L.C., Huang, Z., Przeslawski, R., Webster, I.T., McArthur, M.A., Anderson, T.J., P.J. Siwabessy, Brooke, B. 2011. Including biogeochemical factors and a temporal component in benthic habitat maps: influences on infaunal diversity in a temperate embayment. Marine and Freshwater Research 62 (12): 1432 - 1448. Huang, Z., McArthur, M., Radke, L., Anderson, T., Nichol, S., Siwabessy, J. and Brooke, B. 2012. Developing physical surrogates for benthic biodiversity using co-located samples and regression tree models: a conceptual synthesis for a sandy temperature embayment. International Journal of Geographical Information Science DOI:10.1080/13658816.2012.658808.

A growing need to manage marine biodiversity sustainably at local, regional and global scales cannot be met by applying the limited existing biological data. Abiotic surrogates of biodiversity are thus increasingly valuable in filling the gaps in our knowledge of biodiversity patterns, especially identification of hotspots, habitats needed by endangered or commercially valuable species and systems or processes important to the sustained provision of ecosystem services. This review examines the use of abiotic variables as surrogates for patterns in benthic assemblages with particular regard to how variables are tied to processes affecting biodiversity and how easily those variables can be measured at scales relevant to resource management decisions.

This report provides a description of the research activities completed during the CERF Marine Biodiversity Hub survey of southeast Tasmanian temperate reefs, aboard RV Challenger, as part of the Hub's Surrogates Program. The survey was undertaken as a collaborative exercise between the Tasmania Aquaculture and Fisheries Institute (TAFI, University of Tasmania) and Geoscience Australia (GA), and was completed in two stages during 2008 and 2009. This report describes the methods employed in the mapping and video characterisation of shallow-shelf temperate reef habitats across seven survey sites in southeast Tasmania. Preliminary results are provided of the analysis of multibeam sonar and underwater video data. Examples of the types of biota encountered in the towed video and stills photography, and initial interpretations of the benthic communities are also provided. In addition, initial results are presented from the deployment of an Autonomous Underwater Vehicle (AUV) to collect high resolution photographs of reefs and associated biota.

Physical and biological characteristics of benthic communities are analysed from underwater video footage collected across the George V Shelf during the 2007/2008 CEAMARC voyage. Benthic habitats are strongly structured by physical processes operating over a range of temporal and spatial scales. Iceberg scouring recurs over timescales of years to centuries along shallower parts of the shelf, creating communities in various stages of maturity and recolonisation. Upwelling of modified circumpolar deep water (MCDW) onto the outer shelf, and cross-shelf flow of high salinity shelf water (HSSW) create spatial contrasts in nutrient and sediment supply, which are largely reflected in the distribution of deposit and filter feeding communities. Long term cycles in the advance and retreat of icesheets (over millennial scales) and subsequent focussing of sediments in troughs such as the Mertz Drift create patches of consolidated and soft sediments, which also provide distinct habitats for colonisation by different biota. These physical processes of iceberg scouring, current regimes and depositional environments, in addition to water depth, are shown to be important factors in the structure of benthic communities across the George V Shelf. The modern shelf communities mapped in this study largely represent colonisation over the past 8-12ka, following retreat of the icesheet and glaciers at the end of the last glaciation (Harris et al., 2001; Ingólfsson et al., 1998). Recolonisation on this shelf may have occurred from two sources: deep-sea environments, and possible shelf refugia on the Mertz and Adélie Banks. However, any open shelf area would have been subject to intense iceberg scouring (Beaman and Harris, 2003). Understanding the timescales over which shelf communities have evolved and the physical factors which shape them, will allow better prediction of the distribution of Antarctic shelf communities and their vulnerability to change. This knowledge can aid better management regimes for the Antarctic margin.

Geoscience Australia carried out a marine survey on Lord Howe Island shelf (NSW) in 2008 (SS06-2008) to map seabed bathymetry and characterise benthic environments through co-located sampling of surface sediments and infauna, rock coring, observation of benthic habitats using underwater towed video, and measurement of ocean tides and wave-generated currents. Sub-bottom profile data was also collected to map sediment thickness and shelf stratigraphy. Data and samples were acquired using the National Facility Research Vessel Southern Surveyor. Bathymetric data from this survey was merged with other pre-existing bathymetric data (including LADS) to generate a grid covering 1034 sq km. As part of a separate Geoscience Australia survey in 2007 (TAN0713), an oceanographic mooring was deployed on the northern edge of Lord Howe Island shelf. The mooring was recovered during the 2008 survey following a 6 month deployment. This folder contains the images derived from benthic samples taken on cruise SS06_2008 aboard Southern Surveyor. The main folder houses all images taken while processing samples at the microscope. These images formed the first point of reference in identifying subsequent specimens to save wear and tear on the specimens put aside as reference material. Three additonal folders exist within the main folder. Amphipoda contains repeats of the amphipod taxa, SS062008Biota contains images of live organisms taken as soon as the sample was recovered to the ship and Tanaidacea contains repeats of the tanaid taxa.

This dataset contains species identifications of crinoids collected during survey SOL4934 (R.V. Solander, 27 August - 24 September, 2009). Animals were collected from the Joseph Bonaparte Gulf with a benthic sled. Specimens were lodged at Museum of Victoria on the 19 April 2010. Species-level identifications were undertaken by Kate Naughton at the Museum of Victoria and were delivered to Geoscience Australia in December 2010. See GA Record 2010/09 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.

High-precision measurements of N2 in benthic chamber waters indicated that denitrification occurs within the major sedimentary facies in Port Phillip Bay. The integrated fluxes of biogenic N2 , ammonia, nitrate and nitrite showed that the stoichiometric relationship between organic C and N in the muddy sediments, occupying about 70% of the seafloor, was 5.7, this being similar to the Redfield ratio of 6.6. High denitrifying efficiencies (75-85%; denitrification rates ~1.3 mmol N2 m-2 day-1) at organic carbon loadings of ~15-25 mmol m-2 day-1 indicate that most N processed through the sediments was returned to the overlying waters as biologically (generally) unavailable N2. At sites of high organic carbon loadings to the sediments (>100 mmol m-2 day-1) denitrification rates and denitrifying efficiencies were near zero and most N is returned to the Bay waters as biologically available ammonium. In chambers 'spiked' with 15NO3 , denitrifyers used nitrate produced in the sediments in situ, rather than the exogenous nitrate in overlying waters. The sedimentary microbial processes of ammonification, nitrification and denitrification are therefore tightly coupled.