The central aim of the Comparative Geomorphology of Estuaries Project of the Coastal CRC was to improve our understanding of Australia's near-pristine estuaries. As the title implies, the project had a geomorphic focus in that a major output was mapping of geomorphic habitats of a representative selection of nearpristine estuaries from around Australia.

The Rowley Shoals/Offshore Canning and Roebuck basins survey was conducted on the RV Southern Surveyor survey SS06/2006 (GA-2408) between the 29th May and 22 June 2006. The primary aim of the survey was to identify any sites of natural hydrocarbon seepage, that may provide direct evidence for an active petroleum system within the sub‐surface. A secondary objective was to contribute to the understanding of the modern sedimentary and oceanographic processes influencing this part of the shelf, and to assess the nature of the benthic habitats. Underwater video was captured at 12 sites, with a minimum of 10 minutes to 60 minutes at each site, which totalled approximately 5.5 hours of footage. Video was recorded to mini DV tapes and copied to digital format. Descriptions of footage acquired during the underwater video tows are provided in the post-survey report (GA Record 2007/21 - Geocat # 65453). Please note that the underwater video is unclipped, contains descent and ascent through the water column, laser points in the video are reported to be spaced at 25 cm, and start locations of the underwater video camera stations are found in the Post-survey report.

Geoscience Australia carried out marine surveys in Jervis Bay (NSW) in 2007, 2008 and 2009 (GA303, GA305, GA309, GA312) to map seabed bathymetry and characterise benthic environments through co-located sampling of surface sediments (for textural and biogeochemical analysis) and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wave-generated currents. Data and samples were acquired using the Defence Science & Technology Organisation (DSTO) Research Vessel Kimbla. Bathymetric mapping, sampling and tide/wave measurement were concentrated in a 3x5 km survey grid (named Darling Road Grid, DRG) within the southern part of the Jervis Bay, incorporating the bay entrance. Additional sampling and stills photography plus bathymetric mapping along transits was undertaken at representative habitat types outside the DRG. This 42 sample data set comprises the mineraology of surface seabed sediment (~0-2 cm) in Jervis Bay. More information: Radke, L.C., Huang, Z., Przeslawski, R., Webster, I.T., McArthur, M.A., Anderson, T.J., P.J. Siwabessy, Brooke, B. 2011. Including biogeochemical factors and a temporal component in benthic habitat maps: influences on infaunal diversity in a temperate embayment. Marine and Freshwater Research 62 (12): 1432 - 1448. Huang, Z., McArthur, M., Radke, L., Anderson, T., Nichol, S., Siwabessy, J. and Brooke, B. 2012. Developing physical surrogates for benthic biodiversity using co-located samples and regression tree models: a conceptual synthesis for a sandy temperature embayment. International Journal of Geographical Information Science DOI:10.1080/13658816.2012.658808.

This resource contains geochemistry data for the Oceanic Shoals Commonwealth Marine Reserve (CMR) in the Timor Sea collected by Geoscience Australia during September and October 2012 on RV Solander (survey GA0339/SOL5650). This dataset comprises inorganic element data from the fine fraction (Mud: <63um) of the upper ~2cm of seabed sediment. The Oceanic Shoals Commonwealth Marine Reserve survey was undertaken as an activity within the Australian Government's National Environmental Research Program Marine Biodiversity Hub and was the key component of Research Theme 4 - Regional Biodiversity Discovery to Support Marine Bioregional Plans. Hub partners involved in the survey included the Australian Institute of Marine Science, Geoscience Australia, the University of Western Australia, Museum Victoria and the Museum and Art Gallery of the Northern Territory. Data acquired during the survey included: multibeam sonar bathymetry and acoustic backscatter; sub-bottom acoustic profiles; physical samples of seabed sediments, infauna and epibenthic biota; towed underwater video and still camera observations of seabed habitats; baited video observations of demersal and pelagic fish, and; oceanographic measurements of the water column from CTD (conductivity, temperature, depth) casts and from deployment of sea surface drifters. Further information on the survey is available in the post-survey report published as Geoscience Australia Record 2013/38 (Nichol et al. 2013).

Geoscience Australia carried out marine surveys in Jervis Bay (NSW) in 2007, 2008 and 2009 (GA303, GA305, GA309, GA312) to map seabed bathymetry and characterise benthic environments through co-located sampling of surface sediments (for textural and biogeochemical analysis) and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wave-generated currents. Data and samples were acquired using the Defence Science & Technology Organisation (DSTO) Research Vessel Kimbla. Bathymetric mapping, sampling and tide/wave measurement were concentrated in a 3x5 km survey grid (named Darling Road Grid, DRG) within the southern part of the Jervis Bay, incorporating the bay entrance. Additional sampling and stills photography plus bathymetric mapping along transits was undertaken at representative habitat types outside the DRG. This 128 sample data set comprises major, minor and trace elements derived from x-ray fluorescence analysis of surface seabed sediments (~0-2 cm). Sediment surface area data are also presented. More Information: Radke, L.C., Huang, Z., Przeslawski, R., Webster, I.T., McArthur, M.A., Anderson, T.J., P.J. Siwabessy, Brooke, B. 2011. Including biogeochemical factors and a temporal component in benthic habitat maps: influences on infaunal diversity in a temperate embayment. Marine and Freshwater Research 62 (12): 1432 - 1448. Huang, Z., McArthur, M., Radke, L., Anderson, T., Nichol, S., Siwabessy, J. and Brooke, B. 2012. Developing physical surrogates for benthic biodiversity using co-located samples and regression tree models: a conceptual synthesis for a sandy temperature embayment. International Journal of Geographical Information Science DOI:10.1080/13658816.2012.658808.

In this review we aim to synthesise physical and biological information on the Lord Howe Rise (LHR) region to describe its biogeography at a regional scale (100s of kilometres) and assess this in a national and global context. The LHR region is large (1.95 million km2), spans tropical and cool temperate latitudes (18.4oS to 40.3oS), and is topographically complex being formed of large expanses of soft sediment basins and plateaus (i.e. subdued bathymetric features), with scattered seamounts, guyots, knolls, and pinnacles (i.e. raised bathymetric features). Physical factors can vary between these two broad feature types, particularly regarding depth and substrate, although no clear relationship was detected between sediment texture and geomorphic features across the survey area. Biological data from two recent surveys (TAN0713 and NORFANZ) show differences in assemblages and species distribution between raised and subdued bathymetric features and suggest that biological communities are indeed influenced by substrate as well as depth-related variables, with some taxa such as demersal fish showing latitudinal gradients. There are only limited spatially-replicated studies and no time-series data available for most of the LHR region, but paleo-environmental processes and examples from other regions provide some indication of migration, speciation, and endemism in the LHR region.

The Marine Science Voyage (2010/11 VMS) to the Mertz Glacier region was a collaborative survey involving scientists from a number of research institutions, working across a number of different projects, with the overall aim of conducting a coordinated and comprehensive study to measure and monitor the impact of the Mertz Glacier calving event on the local and regional environment. The survey took place in January 2011 and enabled the collection of data shortly after the calving event so that physical, chemical and biological changes in response to the new conditions can be monitored over time. As such, data collected on VMS will provide a benchmark for tracking future change in the Mertz Glacier region environment. Geoscience Australia and the Australian Antarctic Division conducted a benthic community survey during the voyage. The purpose of the benthic community survey was to collect high-resolution still images of the sea floor to address three main objectives: 1. to investigate benthic community composition in the area previously covered by the MGT and to the east, an area previously covered by approximately 30 m of fast ice; 2. to investigate benthic community composition (or lack thereof) in areas of known iceberg scours; and 3. to investigate the lateral extent of hydrocoral communities along the shelf break. The survey collected over 1800 images of the sea floor on the continental shelf and slope in the Mertz Glacier region, including in the area previously covered by the Mertz Glacier tongue. There were 75 successful camera deployments and a further 7 stations where images were of poor quality but may still provide useful information. The benthic images will be examined in detail to provide information on benthic community composition and substrate type. The survey has provided a major new set of data which will greatly enhance the understanding of Antarctic marine biodiversity and the relationship between physical conditions and benthic communities.

Geoscience Australia has undertaken a classification of biophysical datasets to create seabed habitat maps (termed 'seascapes') for the Australian margin and adjacent sea floor. Seascapes describe a layer of ecologically meaningful biophysical properties that spatially represents potential seabed habitats. Each seascape area corresponds to a region of the seabed that contains similar biophysical properties and, by association, potential habitats and communities. This dataset is a seascape classification for the on-shelf zone of the North-west bioregion. The on-shelf zone is separated from the off-shelf zone due to the availability of the effective disturbance layer for the on-shelf zone only. Also, a higher resolution sea floor temperature layer has been used in the on-shelf analysis.

This chapter presents a broad synthesis and overview based on the 57 case studies included in Part 2 of this book, and on questionnaires completed by the authors. The case studies covered areas of seafloor ranging from 0.15 to over 1,000,000 km2 (average of 26,600 km2) and a broad range of geomorphic feature types. The mean depths of the study areas ranged from 8 to 2,375 m, with about half of the studies on the shelf (depth <120 m) and half on the slope and at greater depths. Mapping resolution ranged from 0.1 to 170 m (mean of 13 m). There is a relatively equal distribution of studies among the four naturalness categories: near-pristine (n=17), largely unmodified (n = 16), modified (n=13) and extensively modified (n=10). In terms of threats to habitats, most authors identified fishing (n=46) as the most significant threat, followed by pollution (n=12), oil and gas development (n=7) and aggregate mining (n=7). Anthropogenic climate change was viewed as an immediate threat to benthic habitats by only three authors (n=3). Water depth was found to be the most useful surrogate for benthic communities in the most studies (n=17), followed by substrate/sediment type (n=14), acoustic backscatter (n=12), wave-current exposure (n=10), grain size (n=10), seabed rugosity (n=9) and BPI/TPI (n=8). Water properties (temperature, salinity) and seabed slope are less useful surrogates. A range of analytical methods were used to identify surrogates, with ARC GIS being by far the most popular method (23 out of 44 studies that specified a methodology).

This study presents compelling evidence for a diverse and abundant seabed community which has developed over the course of the Holocene beneath the Amery Ice Shelf in East Antarctica. Fossil analysis of a 47 cm long sediment core reveals a rich modern fauna, dominated by filter feeders (sponges and bryozoans), with an abundant infauna predominantly of polychaetes. The down-core assemblage reveals a succession in the colonisation of this site. The lower portion of the core (prior to ~9600 yr BP) is completely devoid of preserved fauna. The first colonisers of the site after this time were the mobile benthic organisms. Their occurrence in the core is matched by the first appearance of planktonic taxa, indicating a retreat of the ice shelf following the last glaciation to within sufficient distance to advect planktonic particles via bottom currents. The benthic infauna and filter feeders emerged during the peak abundance of the planktonic organisms, indicating their dependence on this advected food supply which is brought via bottom currents flowing from the open shelf waters of Prydz Bay. Understanding patterns of species succession in this environment has important implications for determining the potential significance of future global change. The collapse of Antarctic ice shelves, as has happened in recent times, would significantly change the organic supply regime, and therefore the nature of these sub-ice shelf benthic communities.