In the past two decades, multibeam sonar systems have become the preferred seabed mapping tool. Many users have assumed that multibeam bathymetry data is highly accurate in spatial position. In reality, both vertical and horizontal uncertainties exist in every data point. These uncertainties are often represented as one single measure of Total Propagated Uncertainty (TPU). TPU is important to understand because it affects the quality of products generated from multibeam bathymetry data. To account for the magnitude and spatial distribution of this influence, an objective uncertainty analysis is required. Randomisation is the key process in such an uncertainty analysis. This study compared two randomisation methods, restricted spatial randomness (RSR) and complete spatial randomness (CSR), in an uncertainty analysis of a slope gradient dataset derived from multibeam bathymetry data. CSR regards data error in every grid cell as independent and assumes that the data error varies within a known statistical distribution without any neighbourhood effect. RSR assumes spatial structure and thus spatial auto-correlation in the data. We present a case study from a survey of the Oceanic Shoals Commonwealth Marine Reserve in the Timor Sea, conducted in 2012 by the Marine Biodiversity Hub through the Australian Government National Environmental Research Program. The survey area is characterised by steep-sided carbonate banks and terraces with abrupt breaks in slope of limited spatial extent. As habitats, the carbonate banks and terraces are important because they provide hardground for diverse epibenthic assemblages of sponges and corals, with their steep sides marking the environmental transition to deeper water, soft sediment habitats. In this analysis, the data errors in the multibeam bathymetry data were assumed to follow a Gaussian distribution with a mean of zero and a standard deviation represented by the TPU. The CSR and RSR methods were each implemented using a Monte Carlo procedure with 500 iterations. After about 300 iterations, the Monte Carlo procedure converged for both methods. Results for the study area are compared against pre-processed slope data (Figure 1a). The averaged slope gradient from the CSR method is 4.5 degree greater than the original slope layer, whereas for the RSR method this value is 0.03 degree. Moreover, the slope layer from the CSR method resolves noticeably less detail than the original slope layer and is an over-simplification of the true bathymetry (Figure 1b). In contrast, the RSR method maintained the spatial pattern and detail observed in the original slope layer (Figure 1c). This study demonstrates that although the uncertainty in multibeam bathymetry data should not be ignored, its impact on the subsequent derivative analysis may be limited. The selection of appropriate randomisation method is important for the uncertainty analysis. When the data errors exhibit spatial structure, we recommend using the RSR method.

The Oceanic Shoals Commonwealth Marine Reserve (CMR) (>71,000 km2) is located in the Timor Sea and is part of the National Representative System of Marine Protected Areas of Australia. The Reserve incorporates extensive areas of carbonate banks and terraces that are recognised in the North and North West Marine Region Management Plans as Key Ecological Features (KEFs). Although poorly studied, these features have been identified as potential biodiversity hotspots for the Australian tropical north. As part of the National Environment Research Program (NERP), Geoscience Australia (GA) in collaboration with the Australian Institute of Marine Sciences (AIMS) undertook a marine biodiversity survey in 2012 to improve the knowledge of this area and better understand the importance of these KEFs. Amongst the many activities undertaken, continuous high-resolution multibeam mapping, video and still camera observations, and physical seabed sampling of four areas covering 510 km2 within the western side of the CMR was completed. Multibeam imagery reveals a high geomorphic diversity in the Oceanic Shoals CMR, with numerous banks and terraces, elevated 30 to 65 m above the generally flat seabed (~105 m water depth), that provide hard substrate for benthic communities. The surrounding plains are characterised by fields of depressions (pockmarks) formed in soft silty sediments that are generally barren of any epibenthos. A distinctive feature of many pockmarks is a linear scour mark that extends several tens of metres (up to 150 m) from pockmark depressions. Previous numerical and flume tank simulations have shown that scouring of pockmarks occurs in the direction of the dominant near-seabed flow. These geomorphic features may therefore serve as a proxy for local-scale bottom currents, which may in turn inform on sediment processes operating in these areas and contribute to the understanding of the distribution of biodiversity. This study focused on characterising these seabed scoured depressions and investigating their potential as an environmental proxy for habitat studies. The study used ArcGIS spatial analyst tools to quantify the features and explored their potential relationships with other variables (e.g. multibeam backscatter, regional modelled bottom stress, biological abundance and presence/absence) to provide insight into their development, and contribute to a better understanding of the environment surrounding carbonate banks. Preliminary results show a relationship between pockmark types, i.e. with or without scour mark, and backscatter strength. This relationship suggests some additional shallow sub-surface control, mainly related to the presence of buried carbonate bank. In addition, the results suggest that tidal flows are redirected by the banks, leading to locally varied flow directions and 'shadowing' in the lee of the larger banks. This in turn is likely to have an influence on the observed density and abundance of benthic assemblages.

This dataset contains sediment and geochemistry information for the Oceanic Shoals Commonwealth Marine Reserve (CMR) in the Timor Sea collected by Geoscience Australia during September and October 2012 on RV Solander (survey GA0339/SOL5650). Further information on the survey is available in the post-survey report published as Geoscience Australia Record 2013/38: Nichol, S.L., Howard, F.J.F., Kool, J., Stowar, M., Bouchet, P., Radke, L., Siwabessy, J., Przeslawski, R., Picard, K., Alvarez de Glasby, B., Colquhoun, J., Letessier, T. & Heyward, A. 2013. Oceanic Shoals Commonwealth Marine Reserve (Timor Sea) Biodiversity Survey: GA0339/SOL5650 - Post Survey Report. Record 2013/38. Geoscience Australia: Canberra. (GEOCAT #76658).

The Petrel Sub-basin Marine Environmental Survey GA-0335, (SOL5463) was undertaken using the RV Solander during May 2012 as part of the Commonwealth Government's National Low Emission Coal Initiative (NLECI). The survey was undertaken as a collaboration between the Australian Institute of Marine Science (AIMS) and GA. The purpose was to acquire geophysical and biophysical data on shallow (less then 100m water depth) seabed environments within two targeted areas in the Petrel Sub-basin to support investigation for CO2 storage potential in these areas. This 10 sample dataset comprises chlorophll abc measurments from surface sediments (0-2 cm) in the Timor Sea.

The Petrel Sub-basin Marine Environmental Survey GA-0335, (SOL5463) was undertaken by the RV Solander during May 2012 as part of the Commonwealth Government's National Low Emission Coal Initiative (NLECI). The survey was undertaken as a collaboration between the Australian Institute of Marine Science (AIMS) and GA. The purpose was to acquire geophysical and biophysical data on shallow (less then 100m water depth) seabed environments within two targeted areas in the Petrel Sub-basin to support investigation for CO2 storage potential in these areas. This dataset comprises TCO2 pools (0-2cm) and fluxes calculated from bottle incubation experiments (24 hours).

Geoscience Australia undertook a marine survey of the Vlaming Sub-basin in March and April 2012 to provide seabed and shallow geological information to support an assessment of the CO2 storage potential of this sedimentary basin. The survey was undertaken under the Australian Government's National CO2 Infrastructure Plan (NCIP) to help identify sites suitable for the long term storage of CO2 within reasonable distances of major sources of CO2 emissions. The Vlaming Sub-basin is located offshore from Perth, Western Australia, and was previously identified by the Carbon Storage Taskforce (2009) as potentially highly suitable for CO2 storage. The principal aim of the Vlaming Sub-basin marine survey (GA survey number GA334) was to look for evidence of any past or current gas or fluid seepage at the seabed, and to determine whether these features are related to structures (e.g. faults) in the Vlaming Sub-basin that may extend up to the seabed. The survey also mapped seabed habitats and biota in the areas of interest to provide information on communities and biophysical features that may be associated with seepage. This research addresses key questions on the potential for containment of CO2 in the Early Cretaceous Gage Sandstone (the basin's proposed CO2 storage unit) and the regional integrity of the South Perth Shale (the seal unit that overlies the Gage Sandstone). This dataset comprises a suite of major and minor inorganic elements from seabed (0-2 cm) sediments.

The Petrel Sub-basin Marine Environmental Survey GA-0335, (SOL5463) was undertaken using the RV Solander during May 2012 as part of the Commonwealth Government's National Low Emission Coal Initiative (NLECI). The survey was undertaken as a collaboration between the Australian Institute of Marine Science (AIMS) and GA. The purpose was to acquire geophysical and biophysical data on shallow (less then 100m water depth) seabed environments within two targeted areas in the Petrel Sub-basin to support investigation for CO2 storage potential in these areas. This dataset comprise TOC, TN and carbon and nitrogen isotope data from surface sediments (0-2cm) in the Timor Sea.

The Petrel Sub-basin Marine Environmental Survey GA-0335, (SOL5463) was undertaken using the RV Solander during May 2012 as part of the Commonwealth Government's National Low Emission Coal Initiative (NLECI). The survey was undertaken as a collaboration between the Australian Institute of Marine Science (AIMS) and GA. The purpose was to acquire geophysical and biophysical data on shallow (less then 100m water depth) seabed environments within two targeted areas in the Petrel Sub-basin to support investigation for CO2 storage potential in these areas. This 10 sample data-set comprises sediment oxygen demand data (expressed as % saturation per gram dry weight) from surface seabed sediments (~0-2 cm) in the Timor Sea.

The Petrel Sub-basin Marine Environmental Survey GA-0335, (SOL5463) was undertaken using the RV Solander during May 2012 as part of the Commonwealth Government's National Low Emission Coal Initiative (NLECI). The survey was undertaken as a collaboration between the Australian Institute of Marine Science (AIMS) and GA. The purpose was to acquire geophysical and biophysical data on shallow (less then 100m water depth) seabed environments within two targeted areas in the Petrel Sub-basin to support investigation for CO2 storage potential in these areas. This 10 sample data-set comprises specific surface area and bulk (%) carbonate data from surface seabed sediments (~0-2 cm) in the Timor Sea.

This report provides details of activities undertaken by the Australian Institute of Marine Science (AIMS), Geoscience Australia, the University of Western Australia and the Museum and Art Gallery of the Northern Territory during a marine biodiversity survey to the Oceanic Shoals Commonwealth Marine Reserve (Timor Sea) in 2012. The survey was an activity within the Australian Government's National Environmental Research Program Marine Biodiversity Hub and is a key component of Theme 4 - Regional Biodiversity Discovery to Support Marine Bioregional Plans. Data collected during the survey will be used to support research being undertaken in other Themes of the Marine Biodiversity Hub, including the modelling of ecosystem processes for the northern region, and to support the work programs of the Department of Environment.