Ecoregions are defined in terms of community structure in function of abiotic or even anthropogenic forcing. They are mesoscale structures defined on the potential habitat of species or predicted communities geographic extent. We assume that they can be more easily defined for long-lived species such as benthos or neritic fish in the marine environment. Uncertainties exist for the pelagic realm because of its higher variability, plus little is known about the meso- and bathypelagic zones. A changing environment and modifications of habitats will probably drive new communities from plankton to fish or top predators. We need based-line studies such as those of CAML, databases like SCAR-MarBIN and tools for integrating all of these observations. Our objective is to understand the biodiversity patterns in the Southern Ocean and how these might change.

In 2007-08 scientists from Australia, Japan and France set out to survey the marine life and habitats in the region adjacent to Terre Adelie and George V Land in East Antarctica (Australian Antarctic Magazine 14: 2-13, 2008). The Collaborative East Antarctic Marine Census (CEAMARC) - part of Australia's contribution to the International Polar Year - aimed to understand the processes that have lead to the evolution and survival of marine life existing in the region today, so that scientists can predict how these organisms may respond to future climate-related changes in their environment. Scientists involved in the census are now finalising the collation and analysis of data and the following pages (13-18) provide an insight into some of the results. The team aims to publish its findings as a series of papers in a special volume of a scientific journal in late 2010.

The East Antarctic continental shelf has had very few studies examining the macrobenthos structure or relating biological communities to the abiotic environment. In this study, we apply a hierarchical method of benthic habitat mapping to Geomorphic Unit and Biotope levels at the local (10s of kilometers) scale across the George V Shelf between longitudes 1421E and 1461E. We conducted a multi-disciplinary analysis of seismic profiles, multibeam sonar, oceanographic data and the results of sediment sampling to define geomorphology, surficial sediment and near-seabed water mass boundaries.

Dense coral-sponge communities on the upper continental slope off George V Land have been identified as a Vulnerable Marine Ecosystem in the Antarctic. The challenge is now to understand their likely distribution. The CEAMARC survey found these communities at sites on the upper slope in depths of 570 - 950m. Based on these results we propose some working hypotheses defining the physical settings suitable for such assemblages. Icebergs scour to 500m in this region and the lack of such disturbance is probably a factor allowing growth of rich benthic ecosystems. In addition, the richest communities are found in the heads of canyons. We suggest two possible oceanographic mechanisms linking abundant filter feeder communities and canyon heads. The canyons in which they occur receive descending plumes of Antarctic Bottom Water formed on the George V shelf and these water masses could entrain abundant food for the benthos. Maps of water properties measured during the Collaborative East Antarctic Marine Census (CEAMARC) survey provide some support for this idea. Another possibility is that the canyons harbouring rich benthos are those that cut the shelf break. Such canyons are known sites of high productivity in other areas because of a number of oceanographic factors, including strong current flow and increased mixing, and the abrupt, complex topography. These hypotheses provide a framework for the identification of areas where there is a higher likelihood of encountering these Vulnerable Marine Ecosystems.

Geoscience Australia carried out marine surveys in south-east Tasmania in 2008 and 2009 (GA0315) to map seabed bathymetry and characterise benthic environments through observation of habitats using underwater towed video. Data was acquired using the Tasmania Aquaculture and Fisheries Institute (TAFI) Research Vessel Challenger. Bathymetric mapping was undertaken in seven survey areas, including: Freycinet Pensinula (83 sq km, east coast and shelf); Tasman Peninsula (117 sq km, east coast and shelf); Port Arthur and adjacent open coast (17 sq km); The Friars (41 sq km, south of Bruny Island); lower Huon River estuary (39 sq km); D Entrecastreaux Channel (7 sq km, at Tinderbox north of Bruny Island), and; Maria Island (3 sq km, western side). Video characterisations of the seabed concentrated on areas of bedrock reef and adjacent seabed in all mapped areas, except for D Entrecastreaux Channel and Maria Island. Seabed sediment samples were collected by TAFI in August 2010 in a targeted area to the east of Tasman Peninsula. Samples were collected at 25 stations using a Van Veen grab, from which a 50 - 100 g sub-sample was taken and submitted to Geoscience Australia for analysis.

A number of terms used in this book are derived from the fields of biogeography and benthic ecology and these are defined in the glossary; the reader is also referred to the works cited at the end of this chapter for further information. Many of the case studies presented in this book refer to habitat classification schemes that have been developed based on principles of biogeography and ecology. For these reasons a brief overview is provided here to explain the concepts of biodiversity, biogeography and benthic ecology that are most relevant to habitat mapping and classification. Of particular relevance is that these concepts underpin classification schemes employed by GeoHab scientists in mapping habitats and other bioregions. A selection of published schemes, from both deep and shallow water environments, are reviewed and their similarities and differences are examined.

Cold seeps and hydrothermal vents can be detected by a number of oceanographic and geophysical techniques as well as the recovery of characteristic organisms. While the definitive identification of a seep or vent and its accompanying fauna is seldom unequivocal without significant effort. We suggest an approach to identifying associated VMEs in the CCAMLR region that uses the results of scientific surveys to identify confirmed features while documenting a series of criteria that can be used by fishing vessels to reduce the accidental disturbance of seep communities.

This dataset contains the sea surface temperature data derived from the MODIS Terra sensor, the chlorophyll data derived from the SeaWIFS satellite, and the K490 data derived from the SeaWIFS satellite. Ocean temperature is a useful indicator of the type of marine life that could be found at a particular location. Many marine plants and organisms have a relatively narrow range of tolerance for temperature, and will either perish or be out-competed where temperatures are outside their comfort zone. Chlorophyll a is a plant pigment which provides a measurement of the biomass (or quantity) of plants. In the water column, it is a measure of the suspended (or planktonic) biomass of single-celled microscopic plants. Chlorophyll is a commonly used measure of water quality. K490 indicates the turbidity of the water column; the depth to which the visible light in the blue-green region of the spectrum penetrates the water column. It is directly related to the presence of particles in the water column. Turbidity has consequences for benthic marine life, ranging from the availability of light to the quantity of nutrients in the water column. The datasets contain 6 grids. Two for each variable: mean and standard deviation. Please see the metadata for detailed information.

The Oceanic Shoals Commonwealth Marine Reserve (CMR) (>71,000 km2) is located in the Timor Sea and is part of the National Representative System of Marine Protected Areas of Australia. The Reserve incorporates extensive areas of carbonate banks and terraces that are recognised in the North and North West Marine Region Management Plans as Key Ecological Features (KEFs). Although poorly studied, these features have been identified as potential biodiversity hotspots for the Australian tropical north. As part of the National Environment Research Program (NERP), Geoscience Australia (GA) in collaboration with the Australian Institute of Marine Sciences (AIMS) undertook a marine biodiversity survey in 2012 to improve the knowledge of this area and better understand the importance of these KEFs. Amongst the many activities undertaken, continuous high-resolution multibeam mapping, video and still camera observations, and physical seabed sampling of four areas covering 510 km2 within the western side of the CMR was completed. Multibeam imagery reveals a high geomorphic diversity in the Oceanic Shoals CMR, with numerous banks and terraces, elevated 30 to 65 m above the generally flat seabed (~105 m water depth), that provide hard substrate for benthic communities. The surrounding plains are characterised by fields of depressions (pockmarks) formed in soft silty sediments that are generally barren of any epibenthos. A distinctive feature of many pockmarks is a linear scour mark that extends several tens of metres (up to 150 m) from pockmark depressions. Previous numerical and flume tank simulations have shown that scouring of pockmarks occurs in the direction of the dominant near-seabed flow. These geomorphic features may therefore serve as a proxy for local-scale bottom currents, which may in turn inform on sediment processes operating in these areas and contribute to the understanding of the distribution of biodiversity. This study focused on characterising these seabed scoured depressions and investigating their potential as an environmental proxy for habitat studies. The study used ArcGIS spatial analyst tools to quantify the features and explored their potential relationships with other variables (e.g. multibeam backscatter, regional modelled bottom stress, biological abundance and presence/absence) to provide insight into their development, and contribute to a better understanding of the environment surrounding carbonate banks. Preliminary results show a relationship between pockmark types, i.e. with or without scour mark, and backscatter strength. This relationship suggests some additional shallow sub-surface control, mainly related to the presence of buried carbonate bank. In addition, the results suggest that tidal flows are redirected by the banks, leading to locally varied flow directions and 'shadowing' in the lee of the larger banks. This in turn is likely to have an influence on the observed density and abundance of benthic assemblages.

Geoscience Australia carried out a marine survey on Carnarvon shelf (WA) in 2008 (SOL4769) to map seabed bathymetry and characterise benthic environments through colocated sampling of surface sediments and infauna, observation of benthic habitats using underwater towed video and stills photography, and measurement of ocean tides and wavegenerated currents. Data and samples were acquired using the Australian Institute of Marine Science (AIMS) Research Vessel Solander. Bathymetric mapping, sampling and video transects were completed in three survey areas that extended seaward from Ningaloo Reef to the shelf edge, including: Mandu Creek (80 sq km); Point Cloates (281 sq km), and; Gnaraloo (321 sq km). Additional bathymetric mapping (but no sampling or video) was completed between Mandu creek and Point Cloates, covering 277 sq km and north of Mandu Creek, covering 79 sq km. Two oceanographic moorings were deployed in the Point Cloates survey area. The survey also mapped and sampled an area to the northeast of the Muiron Islands covering 52 sq km. The dataset contains 6 bathymetry grids of the Carnarvon Shelf study area produced from the processed EM3002 bathymetry data using the CARIS HIPS and SIPS software. Please see the metadata for detailed information.<p><p>This dataset is not to be used for navigational purposes.