Marine physical and geochemical data can be valuable in predicting the potential distributions and assemblages of marine species, acting as surrogate measures of biodiversity. The results of surrogacy analysis can also be useful for identifying ecological processes that link physical environmental attributes to the distribution of seabed biota. This paper reports the results of a surrogacy study in Jervis Bay, a shallow-water, sandy marine embayment in south-eastern Australia. A wide range of high-resolution co-located physical and biological data were employed, including multibeam bathymetry and backscatter data and their derivatives, parameters that describe seabed sediment and water column physical characteristics, seabed exposure, and infauna species. The study applied three decision tree models and a robust model selection process. The results show that the model performance for three diversity indices and seven out of eight infauna species range from acceptable to good. Important surrogates for infauna diversity and species distributions within the mapped area are broad-scale habitat type, seabed exposure, sediment nutrient status, and seabed rugosity and heterogeneity. The results demonstrate that abiotic environmental parameters of a sandy embayment can be used to effectively predict infauna species distributions and biodiversity patterns. International Journal of Geographical Information Science

The World Summit on Sustainable Development implementation plan requires, by 2012, a representative system of marine protected areas (RSMPA) for the purposes of long-term conservation of marine biodiversity. A great challenge for meeting this goal, particularly in data-poor regions, is to avoid inadvertant failure while giving science the time and resources to provide better knowledge. A staged process is needed for identifying areas in data-poor regions that would enable the objectives to be achieved in the long term. We elaborate a procedure that would satisfy the first stage of identifying a RSMPA, including areas suitable as climate change refugia and as reference areas for monitoring change without direct interference of human activities. The procedure is based on the principles of systematic conservation planning. The first step involves the identification of ecologically-separated provinces along with the physical heterogeneity of habitats within those provinces. Ecological theory is then used to identify the scale and placement of MPAs, aiming to be the minimum spatial requirements that would satisfy the principles for a representative system: comprehensiveness, adequacy and representativeness (CAR). We apply the procedure to eastern Antarctica, a region with spatially-restricted sampling of most biota. We use widely available satellite and model data to identify a number of large areas that are likely to encompass important areas for inclusion in a RSMPA. Three large areas are identified for their pelagic and benthic values as well as their suitability as climate change refugia and reference areas. Four other areas are identified specifically for their benthic values. These areas would need to be managed to maintain these values but we would expect them to be refined over time as more knowledge becomes available on the specific location and spatial extent of those values.

This dataset contains species identifications of benthic worms collected during survey TAN0713 (R.V. Tangaroa, 7 Oct - 22 Nov 2007). Animals were collected from the Faust and Capel basins and Gifford Guyot with a boxcore, rock dredge, or epibenthic sled. Specimens were lodged at Museum of Victoria in June 2008. Species-level identifications were undertaken by Robin Wilson at the Museum of Victoria and were delivered to Geoscience Australia on 1 Aug 2008. See GA Record 2009/22 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.

Disturbances characterise many natural environments - on land, a forest fire that removes a patch of old-growth trees is an example. The trees that first colonise the vacant patch may be a different species to the surrounding old-growth forest and hence, taken together, the disturbed and undisturbed forest has a higher biodiversity than the original undisturbed forest. This simple example demonstrates the intermediate disturbance hypothesis (IDH) that has applications in many natural environments. The application of IDH is significant for managers tasked with managing and conserving the biodiversity that exists in a given area. In this report we have used models of seabed sediment mobilisation to examine IDH for Australia's continental shelf environment. Although other disturbance processes may occur (eg. biological, temperature, salinity, anthropogenic, etc.) our study addresses only the physical disturbance of the seabed by waves and currents. Our study has shown that it is feasible to model the frequency and magnitude of seabed disturbance in relation to the dominant energy source (wave-dominated shelf, tide-dominated shelf or tropical cyclone dominated shelf). We focussed our attention on high-energy, patch-clearing events defined as exceeding the Shields parameter value of 0.25. Based on what is known about rates of ecological succession for different substrate types (gravel, sand, mud) we derive maps predicting the spatial distribution of a dimensionless ecological disturbance index (ED). Only a small portion of the shelf (perhaps ~10%) is characterised by a disturbance regime as defined here. Within these areas, the recurrence interval of disturbance events is comparable to the rate of ecological succession and meets our defined criteria for a disturbance regime. To our knowledge, this is the first time such an analysis has been attempted for any continental shelf on the earth.

High-precision measurements of N2 in benthic chamber waters indicated that denitrification occurs within the major sedimentary facies in Port Phillip Bay. The integrated fluxes of biogenic N2 , ammonia, nitrate and nitrite showed that the stoichiometric relationship between organic C and N in the muddy sediments, occupying about 70% of the seafloor, was 5.7, this being similar to the Redfield ratio of 6.6. High denitrifying efficiencies (75-85%; denitrification rates ~1.3 mmol N2 m-2 day-1) at organic carbon loadings of ~15-25 mmol m-2 day-1 indicate that most N processed through the sediments was returned to the overlying waters as biologically (generally) unavailable N2. At sites of high organic carbon loadings to the sediments (>100 mmol m-2 day-1) denitrification rates and denitrifying efficiencies were near zero and most N is returned to the Bay waters as biologically available ammonium. In chambers 'spiked' with 15NO3 , denitrifyers used nitrate produced in the sediments in situ, rather than the exogenous nitrate in overlying waters. The sedimentary microbial processes of ammonification, nitrification and denitrification are therefore tightly coupled.

Lord Howe Island in the southwest Pacific Ocean is the subaerial remnant of a Late Miocene hot-spot volcano. Erosion of the island has formed a shallow (20 - 120 m) sub-tropical carbonate shelf 24 km wide and 36 km long. On the mid shelf an extensive relict coral reef (165 km2) surrounds the island in water depths of 30-40 m. The relict reef comprises sand sheet, macroalgae and hardground habitats. Inboard of the relict reef a sandy basin (mean water depth 45 m) has thick sand deposits. Outboard of the relict reef is a relatively flat outer shelf (mean depth 60 m) with bedrock exposures and sandy habitat. Infauna species abundance and richness were similar for sediment samples collected on the outer shelf and relict reef features, while samples from the sandy basin had significantly lower infauna abundance and richness. The irregular shelf morphology appears to determine the distribution and character of sandy substrates and local oceanographic conditions, which in turn influence the distribution of different types of infauna communities.

Understanding and predicting the bio-physical relationships between seabed habitats, biological assemblages, and marine biodiversity is critical to managing marine systems. Species distributions and assemblage structure of infauna were examined on the oceanic shelf surrounding Lord Howe Island (LHI) relative to seabed complexity within and adjacent to a newly discovered relict coral reef. High resolution multibeam sonar was used to map the shelf, and identified an extensive relict reef in the middle of the shelf, which separated an inner drowned lagoon from the outer shelf. Shelf sediments and infauna were sampled using a Smith McIntyre grab. The three geomorphic zones (drowned lagoon, relict reef and outer shelf) were strong predictors or surrogates of the physical structure and sediment composition of the LHI shelf and its infaunal assemblage. Infaunal assemblages were highly diverse with many new and endemic species recorded. Each zone supported characteristic assemblages and feeding guilds, with higher abundance and diversity offshore.

Zooplankton sampling encompasses a range of methods, but these require specialized equipment, cost, and time. Ship-pumped seawater provides an opportunity to broadly quantify zooplankton abundance and richness during surveys with objectives other than zooplankton characterisation. Here, the effectiveness of sampling ship-pumped seawater for zooplankton was evaluated through the identification of established diurnal and biogeographic patterns as well as comparisons between sampling with surface tows and ship-pumped seawater over the Western Australian margin. Only one species was classed as a fouling organism (unknown Y-shaped polyps), and only one group was excluded from sampling via ship-pumped water (chaetognaths). As expected, we found significant diurnal differences in zooplankton abundance, as well as differences between the Houtman sub-basin (~ 100 km offshore) and the Wallaby (Cuvier) Plateau (~500 km offshore). These results suggest that sampling zooplankton with ship-pumped waters can result in useful broad comparisons of the overall abundance and number of taxa among regions but only when comparisons with surface tows are made. Importantly, sampling via ship-pumped water is not an appropriate method from which to characterize zooplankton communities and in no way replaces or negates the need for more traditional and comprehensive sampling of zooplankton.

This dataset contains species identifications of echinoderms collected during survey GA2476 (R.V. Solander, 12 August - 15 September 2008). Animals were collected from the Western Australian Margin with a BODO sediment grab or rock dredge. Specimens were lodged at Museum of Victoria on the 10 March 2009. Species-level identifications were undertaken by Tim O'Hara at the Museum of Victoria and were delivered to Geoscience Australia on the 24 April 2009. See GA Record 2009/02 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.

This dataset contains species identifications of macro-benthic worms collected during survey SOL4934 (R.V. Solander, 27 August - 24 September, 2009). Animals were collected from the Joseph Bonaparte Gulf with a benthic sled or a Smith-McIntyre grab. Specimens were lodged at Northern Territory Museum on the 24 September 2009. Species-level identifications were undertaken by Chris Glasby at the Northern Territory Museum and were delivered to Geoscience Australia on the 26 October 2009 See GA Record 2010/09 for further details on survey methods and specimen acquisition. Data is presented here exactly as delivered by the taxonomist, and Geoscience Australia is unable to verify the accuracy of the taxonomic identifications.